View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13141_low_3 (Length: 368)
Name: NF13141_low_3
Description: NF13141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13141_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 109 - 360
Target Start/End: Original strand, 28595675 - 28595930
Alignment:
| Q |
109 |
atgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaa-gtttggccaattcagaccttccaaaatttaca |
207 |
Q |
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| T |
28595675 |
atgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaaagtttggccaattcagaccttccaaaatttaca |
28595774 |
T |
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| Q |
208 |
gatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaagttcatcactaaccca---nnnn |
304 |
Q |
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| T |
28595775 |
gatgatctaacaactctaatatcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactaacccattttttt |
28595874 |
T |
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| Q |
305 |
nnncaaacatgcaaatctttatatttgtgtatatgactaatttgtaaacctatgct |
360 |
Q |
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| T |
28595875 |
ttcaaaacatggaaatctttatatttgtgtatatgactaatttgtaaacctatgct |
28595930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 108 - 360
Target Start/End: Original strand, 32493895 - 32494151
Alignment:
| Q |
108 |
gatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttaca |
207 |
Q |
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| T |
32493895 |
gatgcaggtgggtggtccgtcatggacggtaaaactcggaagaagagactccaccgttgctagcaaaagtcaggccaattcagaccttccaaaatttacg |
32493994 |
T |
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| Q |
208 |
gatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaagttcatcactaacccannnnnnn |
307 |
Q |
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| T |
32493995 |
gatgatctaacaactcttatagcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactgacccatttgttt |
32494094 |
T |
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| Q |
308 |
caaacatgcaaa----tctttatatttgtgtatatgactaatttgtaaacctatgct |
360 |
Q |
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| T |
32494095 |
caaacatgcacatgtttatttatatttgtgtgtatggctgatttataaacctatgct |
32494151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 28592311 - 28592181
Alignment:
| Q |
108 |
gatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || || ||||||||||||||| | |||||||| |||||| |
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| T |
28592311 |
gatgcaggtgggtggtccatcatggacggtaaaacttggacggagagactctaccacagcaagcaaaagtttggccaatactgaccttccgttatttacg |
28592212 |
T |
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| Q |
208 |
gatgatctaacaactcttatatcccatttta |
238 |
Q |
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| T |
28592211 |
gacgatcttacaactcttatatctcatttta |
28592181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 28587203 - 28587083
Alignment:
| Q |
118 |
ggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttacagatgatctaa |
217 |
Q |
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||||| || |||||||| |||||||||||||||||||||||||| | || || ||||||||||||||| | |||||||| ||||||||| ||||| | |
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| T |
28587203 |
ggtggcccgtcatggacagtaaaacttggaagaagagactctacaacagcaagcaaaagtttggccaataccgaccttccgttatttacagacgatctta |
28587104 |
T |
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| Q |
218 |
caactcttatatcccatttta |
238 |
Q |
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||||||||||||| ||||||| |
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| T |
28587103 |
caactcttatatctcatttta |
28587083 |
T |
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