View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13141_low_5 (Length: 321)
Name: NF13141_low_5
Description: NF13141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13141_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 19959313 - 19959434
Alignment:
| Q |
193 |
ttgaaaaactaagtttattttgatttgtgatggttgaaaatttcagataaagagggagatatcaactttgaagcttctgaaacatcctaatgttgttaga |
292 |
Q |
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| T |
19959313 |
ttgaaaaactaagtttattttgatttgtgatggttgaaaatttcagataaagagggagatatcaaccttgaagcttctgaaacatcctaatgttgttaga |
19959412 |
T |
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| Q |
293 |
ttatacgaggtaacatcctatg |
314 |
Q |
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| T |
19959413 |
ttatacgaggtaacatcctatg |
19959434 |
T |
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 19959047 - 19959124
Alignment:
| Q |
1 |
gacaattttttgctgtgaagattcttgaaaagaataagattgttgatcttaacaacactgatcaggtttgtgtttcat |
78 |
Q |
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| T |
19959047 |
gacaattttttgctgttaagattcttgaaaagaataagattgttgatcttaataacactgatcaggtttgtgtttcat |
19959124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 117
Target Start/End: Original strand, 19959150 - 19959180
Alignment:
| Q |
87 |
aatctcttttgtgtttttattacaaattgat |
117 |
Q |
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| T |
19959150 |
aatctcttttgtgtttttattacaaattgat |
19959180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 51100398 - 51100322
Alignment:
| Q |
229 |
aaaatttcagataaagagggagatatcaactttgaagcttctgaaacatcctaatgttgttagattatacgaggtaa |
305 |
Q |
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| T |
51100398 |
aaaattgcagataaagagggaaatatgtgccttgaagctcctaaggcatcccaatgttgttaaattatacgaggtaa |
51100322 |
T |
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