View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13141_low_6 (Length: 247)
Name: NF13141_low_6
Description: NF13141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13141_low_6 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 19958783 - 19959012
Alignment:
| Q |
18 |
aaatcaagcattgcatagaacaaaaaaccaagaagccagaagaaataaaatcacaaaaagaatagaattttgtgattattttcattggttttgtgttata |
117 |
Q |
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| T |
19958783 |
aaatcaagcattgcatagaacaaaaaaccaagatgccagaagaaataaaatcacaaaaagaatagaattttgtgattattttcattggttttgtgttata |
19958882 |
T |
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| Q |
118 |
gagaaagagggtcaaagagagagaatttttgttgggaatggtgatcataaatcaagcaaggaggattgaaggaaaaatagtgcgattagggaaatacgaa |
217 |
Q |
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| T |
19958883 |
gagaaagagggtcaaagagagagaatttttgttgggaatggtgatcataaatcaagcaaggaggattgaaggaaaaatagtgcgattagggaaatacgaa |
19958982 |
T |
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| Q |
218 |
ttgggaaaaacacttggtgaaggaaatttt |
247 |
Q |
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| T |
19958983 |
ttgggaaaaacacttggtgaaggaaatttt |
19959012 |
T |
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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 932390 - 932291
Alignment:
| Q |
148 |
gttgggaatggtgatcataaatcaagcaaggaggattgaaggaaaaatagtgcgattagggaaatacgaattgggaaaaacacttggtgaaggaaatttt |
247 |
Q |
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| T |
932390 |
gttggaaatggtgatcataaaccaaacaagaaggaatgaaggaaaagtagtgcaattaggaaaatatgaattaggaaaaacacttggtgaaggaaatttt |
932291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 932435 - 932398
Alignment:
| Q |
85 |
ttttgtgattattttcattggttttgtgttatagagaa |
122 |
Q |
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| T |
932435 |
ttttgtgattattttcattgtttttgtgttatagagaa |
932398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 5732283 - 5732230
Alignment:
| Q |
64 |
aaaatcacaaaaagaatagaattttgtgattattttcattggttttgtgttata |
117 |
Q |
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| T |
5732283 |
aaaatcacaaaaataaaagaattttgcgattgttttcattgaatttgtgttata |
5732230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 18656053 - 18656000
Alignment:
| Q |
64 |
aaaatcacaaaaagaatagaattttgtgattattttcattggttttgtgttata |
117 |
Q |
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| T |
18656053 |
aaaatcacaaaaataaaagaattttgcgattgttttcattgaatttgtgttata |
18656000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 20244472 - 20244513
Alignment:
| Q |
142 |
atttttgttgggaatggtgatcataaatcaagcaaggaggat |
183 |
Q |
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| T |
20244472 |
attttttttgagaatggtgataataaatcaagcaaggaggat |
20244513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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