View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13141_low_7 (Length: 241)
Name: NF13141_low_7
Description: NF13141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13141_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 14825328 - 14825179
Alignment:
| Q |
78 |
aaatttttccctcctccattatcgataaactagnnnnnnnnagaacttgtaattgttgttgtgtttgtctttgattcaattattactaaaaaattcattc |
177 |
Q |
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| T |
14825328 |
aaatttttccctcctccattatcgataaactagttttttttagaacctgtaattgttgttgtgtttgtctttgattcaataattactaaaaaattcattc |
14825229 |
T |
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| Q |
178 |
actatacataaattgtctgtctagatctgaaaaatgtgtgatgaagattt |
227 |
Q |
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| T |
14825228 |
actatacataaattgtctgtctagatccggaaaatgtgtgatgaagattt |
14825179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 12072362 - 12072454
Alignment:
| Q |
119 |
agaacttgtaattgttgttgtgtttgtctttgattcaattattactaaaaaattcattcactatacataaattgtctgtctagatctgaaaaat |
212 |
Q |
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| T |
12072362 |
agaatttgtaattgttgttgtgtttgtgtttggttcaattattact-aaaaataaattcactatacataaactgtctgtctagatccgaaaaat |
12072454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 3190094 - 3190156
Alignment:
| Q |
119 |
agaacttgtaattgttgttgtgtttgtctttgattcaattattactaaaaaattcattcacta |
181 |
Q |
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| T |
3190094 |
agaacttgtaattgttgttgtgtttatctctgattcaattattactaaaaaatttgttcacta |
3190156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 3207017 - 3207079
Alignment:
| Q |
119 |
agaacttgtaattgttgttgtgtttgtctttgattcaattattactaaaaaattcattcacta |
181 |
Q |
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| T |
3207017 |
agaacttgtaattgttgttgtgtttatctctgattcaattattactaaaaaatttgttcacta |
3207079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 79 - 227
Target Start/End: Complemental strand, 26887744 - 26887595
Alignment:
| Q |
79 |
aatttttccctcctccattatcgataaactagnnnnnnnnagaacttgtaattgttgttgtgtttgtctttgattcaattattactaaaaaattcattca |
178 |
Q |
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|||||||||||||||||| ||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |
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| T |
26887744 |
aatttttccctcctccataatcaataaactggtgttttttagaacttgtaattgttgttgtgtttgtctctgattcaattattattaaaaaatttattca |
26887645 |
T |
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| Q |
179 |
ctatacataaattgtctgtctagatctgaaaaatgtg-tgatgaagattt |
227 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
26887644 |
ctatacataaattgtctgtctagatccgaaaaatgtgttgatgaagattt |
26887595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 147797 - 147848
Alignment:
| Q |
119 |
agaacttgtaattgttgttgtgtttgtctttgattcaattattactaaaaaa |
170 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
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| T |
147797 |
agaacttgtaattgttgttgtgtttatctctgattcaattattgctaaaaaa |
147848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 22252757 - 22252803
Alignment:
| Q |
127 |
taattgttgttgtgtttgtctttgattcaattattactaaaaaattc |
173 |
Q |
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| T |
22252757 |
taattgttgttgtgtttgtctctgattcaattattactagaaaattc |
22252803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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