View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13141_low_8 (Length: 218)
Name: NF13141_low_8
Description: NF13141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13141_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 33520299 - 33520115
Alignment:
| Q |
18 |
ctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatatnnnnnnnnntaatgagatcatataatgttattga |
117 |
Q |
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| T |
33520299 |
ctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatataaaaaaaa--aatgagatcatataatgttattga |
33520202 |
T |
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| Q |
118 |
gtattcacgcaccattttctgtaatatacatgggcatgttatgatattttatctttatgtagcctacaatattctccatgccctttg |
204 |
Q |
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| T |
33520201 |
gtattcacgcaccattttctgtaatatacatgggcatgttatgatattttatctttatgtagtctacaatcttctccatgccctttg |
33520115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 33495756 - 33495940
Alignment:
| Q |
18 |
ctttctttatctcttaattcatattgaagtgtttgatatcacacaagtgatcaagcaaaaacatatnnnnnnnnntaatgagatcatataatgttattga |
117 |
Q |
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|||||||| |||| |||| |||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33495756 |
ctttctttgtctcataatgcatattaaagtgtttgatattaaacaagtgatcaagcaaaaacatataaaaagaa--aatgagatcatataatgttattga |
33495853 |
T |
|
| Q |
118 |
gtattcacgcaccattttctgtaatatacatgggcatgttatgatattttatctttatgtagcctacaatattctccatgccctttg |
204 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
33495854 |
gtattcacacaccattttctgtaatatacatgggcaggttttggtattttatctttatgtagtctacaatcttctccatgccctttg |
33495940 |
T |
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