View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13142_high_1 (Length: 803)
Name: NF13142_high_1
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13142_high_1 |
 | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 25 - 724
Target Start/End: Complemental strand, 2156706 - 2155996
Alignment:
| Q |
25 |
gtcttcaatagctatatggatatccaaaatacgaacgagatggatgttcattgtcccaacaattctagttaatatggtaatttagagtttactgattctt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2156706 |
gtcttcaatagctatatggatatccaaaatacgaacgagatggatgttcattgtcccaacaattctagttaatatggtaatttagagtttaccaattctt |
2156607 |
T |
|
| Q |
125 |
caaatcgattgctcattaaccaattgagtttgatgacttgtttgttaatcttctcaaccttaaacttacatgcaatgttccaattaatcaaactttaaaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2156606 |
caaatcgattgctcattaaccaattgagtttgatgacttgtttgttaatcttctcaaccttaaacttacatgcaatgttccaattaatcaaactttaaaa |
2156507 |
T |
|
| Q |
225 |
cttttttcagaggaaatcaaactttacaacttaattaattggttctaaaaatattacatttattcgtcaatttcttttacagttaagccaacatcttata |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2156506 |
cttttttcagaggaaatcaaactttacaacttaa-taattggttctaaaaatattacatttattcgtcaatttcttttacagttaagccaacatcttatc |
2156408 |
T |
|
| Q |
325 |
gtgaaagttgaatatgtcacccatgacgtcaaactttcattttctannnnnnnnactcccacgggttttctctagttagaaagaagaataattagat-aa |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2156407 |
gtgaaagttgaatatgtcacccatgacgtcaaactttcattttctattttttttactcccacgggttttctctagttagaaagaagaataattagataaa |
2156308 |
T |
|
| Q |
424 |
aacaactcgcaatggacaatcaatca-nnnnnnnaccatttagacatattatcatattaactttttaaaattcccttttgttaccnnnnnnnt------- |
515 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2156307 |
aacaactcgcaatggataatcaatcattttttttaccatttagacatattatcatattaactttttaaaattcccttttgttaccaaaaaaatattaatt |
2156208 |
T |
|
| Q |
516 |
---------atttacacaaatatctaaatgataaaatcttattgaatgtgccaataaaagtatttcatattaattgaagttgcataaagtggtaactcaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
2156207 |
ttttaaaatatttacacaaatatctaaatgataaaatcttattgaatatgctaataaaattatttgatattaattgaagttgc------tggtaactcaa |
2156114 |
T |
|
| Q |
607 |
ccgataaaaatgttgaaattattaggtcgaatgtcttgatcggaactcaaacctctactcatctatttattgtgtgtgcgtttttaatgactattgttat |
706 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2156113 |
ctgataaaaatgttgaaattattaggtcgaatgtcttgatcggaactcaaacctctactcatccatttattctgtgtgcgtttttaatgactattgttat |
2156014 |
T |
|
| Q |
707 |
ttcttcatatgccaacat |
724 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2156013 |
ttcttcatatgccaacat |
2155996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 603 - 649
Target Start/End: Original strand, 38157174 - 38157220
Alignment:
| Q |
603 |
tcaaccgataaaaatgttgaaattattaggtcgaatgtcttgatcgg |
649 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||| ||||||| |
|
|
| T |
38157174 |
tcaaccgataaaaatgttgaaattgttagatcgaatgttgtgatcgg |
38157220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 8970 - 9028
Alignment:
| Q |
37 |
tatatggatatccaaaatacgaacgagatggatgttcattgtcccaacaattctagtta |
95 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
8970 |
tatatgggtatccaaaatacgaacgagatggatgtttattgtcccaaccattctagtta |
9028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 18179972 - 18180030
Alignment:
| Q |
37 |
tatatggatatccaaaatacgaacgagatggatgttcattgtcccaacaattctagtta |
95 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
18179972 |
tatatgggtatccaaaatacgaacgagatggatgtttattgtcccaaccattctagtta |
18180030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 646
Target Start/End: Complemental strand, 39809991 - 39809952
Alignment:
| Q |
607 |
ccgataaaaatgttgaaattattaggtcgaatgtcttgat |
646 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
39809991 |
ccgataaaaatgttgaaattattaggtagaatgttttgat |
39809952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University