View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13142_high_11 (Length: 336)
Name: NF13142_high_11
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13142_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 4335967 - 4336284
Alignment:
| Q |
1 |
ttagaagagagaaactcttacaaaaccaggtaaggattttaatgtcttatagannnnnnncatacaatcatcacaaattttggttttagtcacaactacc |
100 |
Q |
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| T |
4335967 |
ttagaagagagaaactcttacaaaaccaggtaaggattttaatgtcttatagatttttttcatacaatcatcacaaattttggttttagtcacaactact |
4336066 |
T |
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| Q |
101 |
taaataatatttgcatgagcgtgaccgagtttaagaatgattgtcttcaattttccaagtgcacatcttagtgagagcaacaatttgttagtttcacgaa |
200 |
Q |
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| T |
4336067 |
taaataatatttgcatgagcgtgaccgagtttaagaatgattgtcttcaattttccaagtgcacatcttagtgagagcaacaatttgttagtttcacgac |
4336166 |
T |
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| Q |
201 |
attaatatcaagagtaatggtaccaacattctctttccagcacttcttttcttattatgtaaatttatctgggtctcattcaatcatttcatttggagtc |
300 |
Q |
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| T |
4336167 |
attaatatcaagagtaatggtaccaacattctctttccagcacttcttttcttattatgtaaatttatctgggtctcattcaatcatttcatttggagtc |
4336266 |
T |
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| Q |
301 |
cattccaatagtcgtgtg |
318 |
Q |
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| T |
4336267 |
cattccaatagtcgtgtg |
4336284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 4345668 - 4345756
Alignment:
| Q |
148 |
caattttccaagtgcacatcttagtgagagcaacaatttgttagtttcacgaaattaatatcaagagtaatggtaccaacattctcttt |
236 |
Q |
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| T |
4345668 |
caatcttccaagtgcacatcttagtgagtggtacaatttgttaatttcacaacattagtatcaagagtaatgctactaacatactcttt |
4345756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 4361828 - 4361900
Alignment:
| Q |
153 |
ttccaagtgcacatcttagtgagagcaacaatttgttagtttcacgaaattaatatcaagagtaatggtacca |
225 |
Q |
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| T |
4361828 |
ttccaagtgcacatcttagggagtggtacaatttgttagcgtcatgacattagtatcaagagtaatgctacca |
4361900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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