View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13142_high_12 (Length: 316)
Name: NF13142_high_12
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13142_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 32902784 - 32903070
Alignment:
| Q |
15 |
tatcatggttgaggacctttcatgttaaggtcctagctcacagtgatttccaaaaatttcttcatgaatctccctagccacatgttctgcttcatgttct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32902784 |
tatcatggttgaggacctttcatgttaaggtcctagctcacagtgatttccaaaaatttcttcatgaatctccctagccacatgttctgcttcatgttct |
32902883 |
T |
|
| Q |
115 |
tcaagacataatagttaaggttcgaaagattcatgtataatttgttagcaatgacaatgtaattgtctcgttaaagaggtagtcctataatttctagatg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32902884 |
tcaagacataatagttaaggttcgaaagattcatgtataatttgttagcaatgacaatgtaattgtctcgttaaagaggtagtcctataatttctagata |
32902983 |
T |
|
| Q |
215 |
cattaagtcagactaatggccaccatacacacttttgtttctaaaattgatggtacttgcaaggattgaaaaactatagaattatgt |
301 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32902984 |
cattaagttagactaatggccaccatacacacttttgtttctaaaattgatggtacttgcaaggattgaaaaactatagaattatgt |
32903070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University