View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13142_high_17 (Length: 232)
Name: NF13142_high_17
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13142_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 47678104 - 47677903
Alignment:
| Q |
16 |
cagagaagttgcttgtagctaatctgatggttgcaaagtcaaattgcaacaagtcgccaactttaagattattaccagcttcagcttcatcttcatcttc |
115 |
Q |
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| T |
47678104 |
cagagaagttgcttgtagctaatctgatggttgcaaagtcaaattgcaacaagtcgccaactttaagattattaccagcttcagcttcatcttcatcttc |
47678005 |
T |
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| Q |
116 |
atttttatcttggcctagtcatgtgtttttacaaatattttggttaatgttataacaacgtcaacaacatttggtttagtaat-aattagtcattaggat |
214 |
Q |
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| T |
47678004 |
atttttatcttggcctagtcatgtgtttttacaaatattttggttaatgttataacaaagtcaacaacatttggtttagtaataaattagtcattaggat |
47677905 |
T |
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| Q |
215 |
gt |
216 |
Q |
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|| |
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| T |
47677904 |
gt |
47677903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 47689553 - 47689412
Alignment:
| Q |
16 |
cagagaagttgcttgtagctaatctgatggttgcaaagtcaaattgcaacaagtcgccaactttaagattattaccagcttcagcttcatcttcatcttc |
115 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||| || ||||||||||||| || ||||| |||||||||| ||||||||| |
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| T |
47689553 |
cagagaagttgcttgtagctattctgatggtttcaaagtcaaattgcaacaaatctccaactttaagatcatcaccagtttcagcttcagattcatcttc |
47689454 |
T |
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| Q |
116 |
atttttatcttggcctagtcatgtgtttttacaaatattttg |
157 |
Q |
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|||||| |||||||| | ||||||||| |||||||||||| |
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| T |
47689453 |
atttttcccttggcctggatatgtgttttcacaaatattttg |
47689412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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