View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13142_high_4 (Length: 477)

Name: NF13142_high_4
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13142_high_4
NF13142_high_4
[»] chr5 (13 HSPs)
chr5 (5-461)||(13871996-13872458)
chr5 (169-451)||(13884286-13884584)
chr5 (322-461)||(13882468-13882607)
chr5 (203-276)||(12957646-12957719)
chr5 (96-162)||(13876670-13876736)
chr5 (311-421)||(16025043-16025153)
chr5 (296-386)||(13874401-13874491)
chr5 (12-70)||(13876911-13876969)
chr5 (333-420)||(14397150-14397237)
chr5 (420-461)||(16024966-16025007)
chr5 (200-289)||(13874513-13874605)
chr5 (422-461)||(40165746-40165785)
chr5 (337-383)||(14392607-14392653)


Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 5 - 461
Target Start/End: Complemental strand, 13872458 - 13871996
Alignment:
Q  5 ggtagattattctttagaagattttatcgtgtatgtgtacatgggtggcattaaaaatgttcgtttcaagcacttatggataagataaacaagaagtttg 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13872458 ggtaaattattctttagaagattttatcgtgtatgtgtacatgggtgacattaaaaatgttcgtttcaagcacttatggataagataaacaagaagtttg 13872359  T
Q  105 cattaagggaaacaaatttaaaattagtaggatggataaatagtttgattaagcacttttaaactttttgtttataccaggcatcgctacaaataatcaa 204  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13872358 cattaagggaaacaaatttaaaattagtagaatggataaatagtttgattaagcacttttaaaatttttgtttataccaggcatcgctacaaataatcaa 13872259  T
Q  205 tggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttggtaattg----tctgt--cattctgttgtcggagtgt 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||  |  |   |||||||| |||    
T  13872258 tggccccatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttggtaattgtcattctgttgccgtaacttgtcggattgt 13872159  T
Q  299 caaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccg 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13872158 caaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccg 13872059  T
Q  399 gcattcctacgagtaatgtactgctgaatgtttgtttctttatcatggtttagagtggtgatt 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13872058 gcattcctacgagtaatgtactgctgaatgtttgtttctttatcatggtttagagtggtgatt 13871996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 169 - 451
Target Start/End: Complemental strand, 13884584 - 13884286
Alignment:
Q  169 tttttgtttataccaggcatcgctacaaataatcaatggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttgg 268  Q
    ||||||||||||| |  |||| || ||| |||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13884584 tttttgtttatacga--catcactgcaagtaattaatggcttcatttccttgttaattgtgtttatgggaagtgatcactacacttgttgaagttcttgg 13884487  T
Q  269 taattgtctgtcat------tctgttgtcggagtgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaacta------------ 350  Q
    ||||||||  ||        |  |||||  |  ||||||||| |||| |||||||||||||||| |||  ||||||||||||||||||                
T  13884486 taattgtcattctggtgccgtaagttgttagtttgtcaaatcttagttttgatagcataatttccttt--aactgttttatggaactaacaagtgagaac 13884389  T
Q  351 --tcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtactgctgaatgtttgtttctttatcatggtt 448  Q
      ||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||| || ||||||||||||||||    
T  13884388 tatcaagtgatcacctcacttgtgaagttctttgtaattgtctttctccggcatcccaacgagtaatgtcctgctgaatgcttctttctttatcatggtt 13884289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 322 - 461
Target Start/End: Complemental strand, 13882607 - 13882468
Alignment:
Q  322 atttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtactg 421  Q
    |||||||||||||||||||||||| |||||   ||||||  ||||||||||||||||||||||||||||||||||| || |   |||  | |||||||||    
T  13882607 atttcatttttaactgttttatgggactatactgtgatcctctcacttgttaagttctttgtaattgtctttctccagcgtcattacatgcaatgtactg 13882508  T
Q  422 ctgaatgtttgtttctttatcatggtttagagtggtgatt 461  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13882507 ctgaatgtttgtttctttatcatggtttagagtggtgatt 13882468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 12957646 - 12957719
Alignment:
Q  203 aatggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttggtaattgtc 276  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  12957646 aatggcctcatttccttgttaattgtgtttatgggaagtgattactacactttttgaagttcttggtaattgtc 12957719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 13876736 - 13876670
Alignment:
Q  96 agaagtttgcattaagggaaacaaatttaaaattagtaggatggataaatagtttgattaagcactt 162  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  13876736 agaagtttgcattaagggaaacaaatttaaaattagtaagatggataaatagtttgattaaacactt 13876670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 16025153 - 16025043
Alignment:
Q  311 ttgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacga 410  Q
    |||||||||  |||||||||||||||||||||||| |||||||| |||||   | |||||| ||||||||| ||||||||||||||||||||  ||||||    
T  16025153 ttgatagcaccatttcatttttaactgttttatgggactatcaaatgatcgatttacttgtgaagttctttataattgtctttctccggcatcactacga 16025054  T
Q  411 gtaatgtactg 421  Q
    || ||||||||    
T  16025053 gtgatgtactg 16025043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 13874491 - 13874401
Alignment:
Q  296 tgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaat 386  Q
    ||||||||||||| ||||||| ||| |||| ||||| ||  |||||| || |||||||||||||| |||||||||||||||||||||||||    
T  13874491 tgtcaaatcatagcattgataacatcatttaattttcaatggttttacgggactatcaagtgatcccctcacttgttaagttctttgtaat 13874401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 13876969 - 13876911
Alignment:
Q  12 tattctttagaagattttatcgtgtatgtgtacatgggtggcattaaaaatgttcgttt 70  Q
    |||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  13876969 tattctttagaagattttattgtgtatgtatacatgggtggcatgaaaaaggttcgttt 13876911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 420
Target Start/End: Original strand, 14397150 - 14397237
Alignment:
Q  333 aactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtact 420  Q
    ||||||||||||| ||||||||||| || |||||||| | |||||||||||||| || |||| |||||||  | | ||||||||||||    
T  14397150 aactgttttatgggactatcaagtgttcccctcacttttaaagttctttgtaatcgtgtttcaccggcatcacaatgagtaatgtact 14397237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 461
Target Start/End: Complemental strand, 16025007 - 16024966
Alignment:
Q  420 tgctgaatgtttgtttctttatcatggtttagagtggtgatt 461  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  16025007 tgctgaatgtttttttctttatcatggtttagggtggtgatt 16024966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 13874605 - 13874513
Alignment:
Q  200 atcaatggcctcatttcc-ttgttaattgtgtttatagg---aagtgatcactacacttgttgaagttcttggtaattgtctgtcattctgttg 289  Q
    |||||||||||||||| | ||||||||||||||||| ||   |||||||| | ||||||| ||||||||||||||||| ||  ||||||| |||    
T  13874605 atcaatggcctcattttcgttgttaattgtgtttatgggactaagtgatcgccacacttg-tgaagttcttggtaattctcattcattctattg 13874513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 461
Target Start/End: Original strand, 40165746 - 40165785
Alignment:
Q  422 ctgaatgtttgtttctttatcatggtttagagtggtgatt 461  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  40165746 ctgaatgtttgtttctttatcatggtttaggctggtgatt 40165785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 14392607 - 14392653
Alignment:
Q  337 gttttatggaactatcaagtgatcacctcacttgttaagttctttgt 383  Q
    ||||||||| |||||||||||||| |||||||||| |||||| ||||    
T  14392607 gttttatgggactatcaagtgatcccctcacttgtaaagttcattgt 14392653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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