View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13142_high_6 (Length: 450)
Name: NF13142_high_6
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13142_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 112 - 388
Target Start/End: Original strand, 30513976 - 30514261
Alignment:
| Q |
112 |
agacctctaacctcatctaaaaatttatagtatctgagtctattcattcgggtcatccaccagtttatccatgcacctagcccaatag------gtgtaa |
205 |
Q |
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| T |
30513976 |
agacctctaacctcatctaaaaatttatagtatgagagtctattcatttgggttatccaccaatttatccatgcacctagcccaatagtactaggtgtga |
30514075 |
T |
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| Q |
206 |
tggagtgtattgnnnnnnnccaagtcacacattgaaaagagataaaccatttgtttgtgttcgtgtttgtacatcaatattcatacgtttcctgtgaagc |
305 |
Q |
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| T |
30514076 |
tggagtgtgttgaaaaaaaccaagtcacgcattgaaaatagataaaccatttatttgttttcgtgtttgtacatcaatatccatatgttttttgtgaagc |
30514175 |
T |
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| Q |
306 |
tactactct---cagcttcataaaaatcacgtcaaatgatcattgggacgtgataattttggtcccaccgccaaaccaaacgacca |
388 |
Q |
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| T |
30514176 |
tactactctcaacagcttcgtaaaaatcatgtcaaatggtcaatgggacgtgataattttggtccaactgccaaaccaaacaacca |
30514261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 112 - 388
Target Start/End: Original strand, 30554316 - 30554601
Alignment:
| Q |
112 |
agacctctaacctcatctaaaaatttatagtatctgagtctattcattcgggtcatccaccagtttatccatgcacctagcccaatag------gtgtaa |
205 |
Q |
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| T |
30554316 |
agacctctaacctcatctaaaaatttatagtatgagagtctattcatttgggttatccaccaatttatccatgcacctagcccaatagtactaggtgtga |
30554415 |
T |
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| Q |
206 |
tggagtgtattgnnnnnnnccaagtcacacattgaaaagagataaaccatttgtttgtgttcgtgtttgtacatcaatattcatacgtttcctgtgaagc |
305 |
Q |
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| T |
30554416 |
tggagtgtgttgaaaaaaaccaagtcacgcattgaaaatagataaaccatttatttgttttcgtgtttgtacatcaatatccatatgttttttgtgaagc |
30554515 |
T |
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| Q |
306 |
tactactct---cagcttcataaaaatcacgtcaaatgatcattgggacgtgataattttggtcccaccgccaaaccaaacgacca |
388 |
Q |
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| T |
30554516 |
tactactctcaacagcttcgtaaaaatcatgtcaaatggtcaatgggacgtgataattttggtccaactgccaaaccaaacaacca |
30554601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 30513690 - 30513794
Alignment:
| Q |
16 |
atcattcaattgtgtcatgaactatgattaatttcattttatggattgttggttcaattgtatactctaaagaatacaattatattggaaaatgtaagac |
115 |
Q |
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| T |
30513690 |
atcattcaattgtgtcatgaactatgattaatttcattttatggattgttggttcaattgtatacaataaagaatacaataatattggaaaatgtaagac |
30513789 |
T |
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| Q |
116 |
ctcta |
120 |
Q |
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||||| |
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| T |
30513790 |
ctcta |
30513794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 30554030 - 30554134
Alignment:
| Q |
16 |
atcattcaattgtgtcatgaactatgattaatttcattttatggattgttggttcaattgtatactctaaagaatacaattatattggaaaatgtaagac |
115 |
Q |
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| T |
30554030 |
atcattcaattgtgtcatgaactatgattaatttcattttatggattgttggttcaattgtatacaataaagaatacaataatattggaaaatgtaagac |
30554129 |
T |
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| Q |
116 |
ctcta |
120 |
Q |
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||||| |
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| T |
30554130 |
ctcta |
30554134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 253 - 388
Target Start/End: Complemental strand, 33262008 - 33261883
Alignment:
| Q |
253 |
catttgtttgtgttcgtgtttgtacatcaatattcatacgtttcctgtgaagctactactctcagcttcataaaaatcacgtcaaatgatcattgggacg |
352 |
Q |
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| T |
33262008 |
catttgtttgttttcgcttttgtacatcaatatttgtgcgttttctgtgaagctact----------tcataaaaatcacgtcaaatggtcattgtgacg |
33261919 |
T |
|
| Q |
353 |
tgataattttggtcccaccgccaaaccaaacgacca |
388 |
Q |
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| T |
33261918 |
tgataattttggtcccacagccaaaccaaacaacca |
33261883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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