View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13142_high_8 (Length: 374)

Name: NF13142_high_8

Description: NF13142

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13142_high_8

[»] chr3 (1 HSPs)

Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 356; E-Value: 0

Query Start/End: Original strand, 3 - 374

Target Start/End: Original strand, 34058779 - 34059150

Alignment:

Q	3	atcatgttaaggtttcgtcccatcgcccctaagccatgcaccgtctccgacgtcgatgctttttcaaaacccgacggatctagaaaaaaccacgcaaaag	102	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	34058779	atcatgttaaggtttcgtcccatcgcccctaagccatgcaccgtctccgacgtcgatgctttttcaaaacccgacggatctagaaaaaaccgtgcaaaag	34058878	T

Q	103	ataacaccgtcaacaaacggtgtaaccgtcggaggaaaactgtgccttcaccgacggtggtgactctcccgcttcttcccgagactccagatcctaaagt	202	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34058879	ataacaccgtcaacaaacggtgtaaccgtcggaggaaaactgtgccttcaccgacggtggtgactctcccgcttcttcccgagactccagatcctaaagt	34058978	T

Q	203	tcctctacttccttcctcagccaaaaacacaaacaaaccggtgtgtctgagcttcgagaatcacggccacactaccacgtcggagaaggtggatcttaca	302	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34058979	tcctctacttccttcctcagccaaaaacacaaacaaaccggtgtgtatgagcttcgagaatcacggccacactaccacgtcggagaaggtggatcttaca	34059078	T

Q	303	gcggtagggttaggaggctcagtagtaacagttgagtgtgtaaccgacacgtggcagcatggtgatgaaggg	374	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34059079	gcggtagggttaggaggatcagtagtaacagttgagtgtgtaaccgacacgtggcagcatggtgatgaaggg	34059150	T

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