View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13142_low_10 (Length: 339)
Name: NF13142_low_10
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13142_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 34552753 - 34552446
Alignment:
| Q |
18 |
agcaatcaccaatattgaggaattggagatacaatctagtgagttgatggagtatttagtgagagatgatgaagatggtgatgaaggtggccatattaat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
34552753 |
agcaatcaccaatattgaggaattggagatacaatcttgtaagttgatggagtatttagtgacagatgatgaagatggtgatgaaggtgaccatattaat |
34552654 |
T |
|
| Q |
118 |
aaagaggaagtaaatattatctcgtttgaaaaattagattccttaacactttcaagactcccaagtatagcacatgtttctgcaaattcttacaagatag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34552653 |
aaagaggaagtaaatattatctcgtttgaaaaattagattccttaacactttcaagactcccaagtatagcacatgtttctgcaaattcttacaagatag |
34552554 |
T |
|
| Q |
218 |
aatttccatccttaagaaagttggtaattaatgattgtccaaagctagatacattgcttttgcaatgtgcatatacaaagcacacaaatcattccattgc |
317 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
34552553 |
aatttccatccttaagaaagttggtaattgatgattgtccaaagctagatacattgcttttgctatgtgcatatacaaagcacacaaatcattccactgc |
34552454 |
T |
|
| Q |
318 |
atcatatt |
325 |
Q |
| |
|
|||||||| |
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| T |
34552453 |
atcatatt |
34552446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 34564477 - 34564171
Alignment:
| Q |
18 |
agcaatcaccaatattgaggaattggagatacaatctagtgagttgatggagtatttagtgagagatgatgaagatggtgatgaaggtggccatattaat |
117 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |
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| T |
34564477 |
agcaatcaccaatattgagaaattggagataagatcttgtaagttgatggagtatttagtgaccactgaagaagatg---atgaaggtggccatattaat |
34564381 |
T |
|
| Q |
118 |
aaagaggaagtaaatattatctcgtttgaaaaattagattccttaacactttcaagactcccaagtatagcacatgtttctgcaaattcttacaagatag |
217 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
34564380 |
aaagaggaagtaaatatcatctcgtttgaaaaattagattccttaacactttcaggactcccaagtatagcacgtgtttctgcaaattcttacgagatag |
34564281 |
T |
|
| Q |
218 |
aatttccatccttaagaaagttggtaattaatgattgtccaaagctagatacattgcttttgcaatgtgcatatacaaagcacacaaatcattccattgc |
317 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||| | ||||||| | |||| |
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| T |
34564280 |
aatttccatccttaagaaagttggtaattgatgattgtccaaagctagatacattgtttttgctaaccgcatatacaaagcaaaacaatcatttcgttgc |
34564181 |
T |
|
| Q |
318 |
atcatattca |
327 |
Q |
| |
|
||||||||| |
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|
| T |
34564180 |
gtcatattca |
34564171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 327
Target Start/End: Original strand, 132126 - 132430
Alignment:
| Q |
23 |
tcaccaatattgaggaattggagatacaatctagtgagttgatggagtatttagtgagagatgatgaagatggtgatgaaggtggccatattaataaaga |
122 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||| |||| |||||||| || |||||||| || ||||||||||| |
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|
| T |
132126 |
tcaccaatcttgagaaattggagataaaatcttgtaagttgatggagtatttagtgaccaatgaagaagatggcgaagaaggtggtcaaattaataaaga |
132225 |
T |
|
| Q |
123 |
ggaagtaaatattatctcgtttgaaaaattagattccttaacactttcaagactcccaagtatagcacatgtttctgcaaattcttacaagatagaattt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| | |||||| ||||||||||||||||| | ||||||||||| |
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|
| T |
132226 |
ggaagtaaatattatctcgtttgaaaaactagattccttaaaactttctggactcccaaatctagcacgtgtttctgcaaattcttgcgagatagaattt |
132325 |
T |
|
| Q |
223 |
ccatccttaagaaagttggtaattaatgattgtccaaagctagatacattgcttttgcaatgtgcatatacaaagcacacaaatcattccattgcatcat |
322 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||||||| ||||||||| |
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| T |
132326 |
ccatccttaagaaagttggtgattgatgattgtccaaagctagatacattgtttttgctaagtgcatatacaaagcacaacaatcattatgttgcatcat |
132425 |
T |
|
| Q |
323 |
attca |
327 |
Q |
| |
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||||| |
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|
| T |
132426 |
attca |
132430 |
T |
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