View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13142_low_13 (Length: 286)
Name: NF13142_low_13
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13142_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 34059429 - 34059172
Alignment:
| Q |
18 |
taatctccatgcaaaaccaccacagtccaatctccacgcatcacacggaactcttctctctttcccatacgcgtactgtactctcaccctgcacgtgaat |
117 |
Q |
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| T |
34059429 |
taatctccatgcaaaaccaccacagtccaatctccacgcatcacacggaactcttctctctttcccatacgcgtactgtactctcaccctgcacgtgaat |
34059330 |
T |
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| Q |
118 |
ccactttcactgtccggtaccctaaccaaccaaacttgcccttctcccaccatttccctgtatgcactattcctccacgtcactctcccataaccgtccg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34059329 |
ccactttcactgtccggtaccctaaccaaccaaacttgcccttctcccaccatttccctgtatgcactattcctccacgtcactctcccataaccgtccg |
34059230 |
T |
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| Q |
218 |
atataaatccaggacacgcgtccttctctagtttcactttcctctcctcgtcgtctct |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34059229 |
atataaatccaggacacgcgtccttctctagtttcactttcctctcctcgtcgtctct |
34059172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 42974394 - 42974345
Alignment:
| Q |
191 |
tccacgtcactctcccataaccgtccgatataaatccaggacacgcgtcc |
240 |
Q |
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| T |
42974394 |
tccacgtcactctcccgtaaccgtccgatataaaccctggacacgtgtcc |
42974345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 42974588 - 42974544
Alignment:
| Q |
18 |
taatctccatgcaaaaccaccacagtccaatctccacgcatcaca |
62 |
Q |
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| T |
42974588 |
taatctccatgcaaacccaccacaatccattctccacacatcaca |
42974544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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