View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13142_low_16 (Length: 243)

Name: NF13142_low_16
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13142_low_16
NF13142_low_16
[»] chr8 (11 HSPs)
chr8 (17-228)||(17802213-17802424)
chr8 (57-228)||(17870405-17870576)
chr8 (43-228)||(17718143-17718328)
chr8 (43-228)||(17854876-17855061)
chr8 (57-222)||(17781256-17781421)
chr8 (46-228)||(17846002-17846184)
chr8 (43-228)||(17923240-17923425)
chr8 (57-228)||(17814084-17814255)
chr8 (46-228)||(17821083-17821265)
chr8 (63-228)||(17692819-17692984)
chr8 (45-143)||(17825362-17825460)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 17802213 - 17802424
Alignment:
Q  17 atgatttggttggcaagttaaattagttagaaacataatcacctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatg 116  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17802213 atgatttgattggcaagttaaattagttagaaacataattacctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatg 17802312  T
Q  117 aagtttggtatgatgaactctttcacagtgtttttgcacttcatgaagttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17802313 aagtttggtatgatgaactctttcacagtgtttttgcacttcatgaagttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagt 17802412  T
Q  217 tcagtaataagt 228  Q
    ||||| ||||||    
T  17802413 tcagtcataagt 17802424  T

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Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 17870405 - 17870576
Alignment:
Q  57 acctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcacagtgtttttgcact 156  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||    |||||||||    
T  17870405 acctatgacataagtccagtgtttaaccgaatcagtatgatgccaatcttcaccctcatgaagcttggtatgatgaactctttcacaaacattttgcact 17870504  T
Q  157 tcatgaagttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagttcagtaataagt 228  Q
    || |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  17870505 tcgtgaagttctgatgcaaatagtttgaagaacttttcagctggtgttttgatcccaagttcagtaataagt 17870576  T

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Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 17718143 - 17718328
Alignment:
Q  43 ttagaaacataatcacctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcac 142  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  17718143 ttagaaacataattacctatgacataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagtttggcaccatgaactctttcac 17718242  T
Q  143 -agtgtttttgcacttcatgaagttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagttcagtaataagt 228  Q
     | || ||||||||||| |||||||||||||||||||||||||||||| | ||  |||||||||||||||||||||||||| |||||    
T  17718243 taatg-ttttgcacttcgtgaagttctgatgcaaatagtttgaagaacttgtcgacgggtgttttgatcccaagttcagtactaagt 17718328  T

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Target: chr8; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 17854876 - 17855061
Alignment:
Q  43 ttagaaacataatcacctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcac 142  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  17854876 ttagaaacataattacctatgacataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcac 17854975  T
Q  143 agtgtttttgcacttcatgaagttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagttcagtaataagt 228  Q
    |   ||| |||||||| |||||||||||||||||||||||||||||| | ||  | |||| |||||||||||||||||| ||||||    
T  17854976 aaactttgtgcacttcgtgaagttctgatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagt 17855061  T

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Target: chr8; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 17781256 - 17781421
Alignment:
Q  57 acctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcacagtgtttttgcact 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  17781256 acctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcacaaaggttttgcact 17781355  T
Q  157 tcatgaagttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagttcagta 222  Q
    ||||||||||||| |   || |  ||| ||||| | ||||| |||||||||||||||| |||||||    
T  17781356 tcatgaagttctgttatgaacaaattgtagaacttgtcagctggtgttttgatcccaacttcagta 17781421  T

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Target: chr8; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 17846002 - 17846184
Alignment:
Q  46 gaaacataatcacctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcacagt 145  Q
    |||||||| | ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||      
T  17846002 gaaacatagttacctatgacaatagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaattctttcacaaa 17846101  T
Q  146 gtttttgcacttcatgaagttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagttcagtaataagt 228  Q
     |||||||||||| || ||||||||||||||||||||||||||| | ||  | |||| ||| |||||||||||||| ||||||    
T  17846102 ctttttgcacttcgtggagttctgatgcaaatagtttgaagaacttctcccctggtgctttaatcccaagttcagtgataagt 17846184  T

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Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 17923240 - 17923425
Alignment:
Q  43 ttagaaacataatcacctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttc-a 141  Q
    ||||||| | ||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||  |||||| |    
T  17923240 ttagaaagacaattacccatgacataagtccagtgtttaaccgaatcactgtgatgccaatcttcaccttcatgaagcttggtatgatgacatctttcaa 17923339  T
Q  142 cagtgtttttgcacttcatgaagttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagttcagtaataagt 228  Q
    ||  | ||||||||||| |||||||  | ||||||||||| ||||||| | ||| ||||||||||||||||||||||||| ||||||    
T  17923340 caacg-ttttgcacttcgtgaagttgagttgcaaatagttggaagaacttctcaccgggtgttttgatcccaagttcagtgataagt 17923425  T

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Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 17814084 - 17814255
Alignment:
Q  57 acctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcacagtgtttttgcact 156  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||| ||||||| ||| || ||||| | ||||||||||||||| ||  |||||| |    
T  17814084 acctatgacataagtccaatgtttaaccgtatcagtgtgatgccaatcatcaccttgatgcagcttggtttcatgaactctttcacaatggatttgcatt 17814183  T
Q  157 tcatgaagttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagttcagtaataagt 228  Q
    |||||||||| || |||||| |  ||| ||||| | ||| ||| || ||||||||||||||||||| |||||    
T  17814184 tcatgaagttgtgttgcaaagaaattgtagaacttgtcaacggatgctttgatcccaagttcagtactaagt 17814255  T

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Target: chr8; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 17821083 - 17821265
Alignment:
Q  46 gaaacataatcacctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcacagt 145  Q
    |||||||| | |||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||||| ||||| ||   ||||||||||||||||||      
T  17821083 gaaacatacttacctatgacaaaagtccaatgtttaaccgaatcattgtgatgccaatgttcaccttcgtgaagcttaccatgatgaactctttcacaaa 17821182  T
Q  146 gtttttgcacttcatgaagttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagttcagtaataagt 228  Q
      || |||||||| ||||||||||||||| || ||||||||||| | ||  | |||| ||| |||||||||||||| ||||||    
T  17821183 cgttatgcacttcgtgaagttctgatgcatattgtttgaagaacttctcccctggtgctttaatcccaagttcagtgataagt 17821265  T

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Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 17692819 - 17692984
Alignment:
Q  63 gacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcacagtgtttttgcacttcatga 162  Q
    ||||| ||||||||||||||| ||||||| ||||||||| || ||||||| ||| || ||||| | |||||| ||||||||    ||||||||||| |||    
T  17692819 gacatgagtccagtgtttaactgaatcagagtgatgccattcatcaccttgatgcagcttggtttcatgaacactttcacaaatgttttgcacttcgtga 17692918  T
Q  163 agttctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagttcagtaataagt 228  Q
    |  | |||||| ||||||||||||||| | |||| || || ||||||||||| ||||||| |||||    
T  17692919 atatttgatgcgaatagtttgaagaacttgtcagaggatgctttgatcccaatttcagtactaagt 17692984  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 17825362 - 17825460
Alignment:
Q  45 agaaacataatcacctatgacataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcaca 143  Q
    |||| |||||| |||||||||||||||||| |||||||||||||||| |  |||||| || ||||||| ||| ||||| || | ||| |||||||||||    
T  17825362 agaagcataattacctatgacataagtccactgtttaaccgaatcagagccatgccagtcatcaccttgatgcagtttagtttcatggactctttcaca 17825460  T

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