View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13142_low_3 (Length: 596)
Name: NF13142_low_3
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13142_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Original strand, 32771021 - 32771406
Alignment:
| Q |
19 |
gctattgctgtagtaccaagtacaatggcagtagtaatagagccccaaatccatttctgcctcctagaccttctttgtctctctcgccttgccgtctcta |
118 |
Q |
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| T |
32771021 |
gctattgctgtagtaccaagtacaatggcagtagtaatagagccccaaatccatttctgcctcctagaccttctttgtctctctcgccttgccgtctcta |
32771120 |
T |
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| Q |
119 |
aatataacagaaaatgacataaatgaaaagtggagcaaagcaggctaaaaataaactaggacatatatttaggaagcaaacaaggtaccaacagaaaaca |
218 |
Q |
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| T |
32771121 |
aatataacagaaa------taaatgagaagtggagcaaagcaggctaaaaataaactaggacatatatttaggaagcaaacaaggtaccaacagaaaaca |
32771214 |
T |
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| Q |
219 |
gaatttcgcttgcgtgaaaatgtcataggcaacagctaattacatatcctagagaatttaaaatctgtggattgacccactaaaattttgctcaaatcat |
318 |
Q |
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| T |
32771215 |
gaatatcgcttgcgtgaaaatgtcataggcaacagctaattacatatcctagagaatttaaaatctgtggattgacccactaaaattttgctcaaatcat |
32771314 |
T |
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| Q |
319 |
gatctagcctaacatgatatgtagataggtaaatggtaaatactagtaagcaaataaacactgcccctacaaatgtgttgttgcatgaacct |
410 |
Q |
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| T |
32771315 |
gatctagcctaacatgatatatagataggtaaatggtaaatactagtaagcaaataaacactgctcctacaaatgtgttgttacatgaacct |
32771406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 470 - 587
Target Start/End: Original strand, 32771466 - 32771583
Alignment:
| Q |
470 |
catgttaatgctctaaagaaactttggaattaaagcacttgtaaagagtcaaagtcctttcaaatgcataccttgcgattatagtacattactacatgcc |
569 |
Q |
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| T |
32771466 |
catgttaatgctctaaagaaacttcggaattaaagcacttgtaaagagtcaaagtcctttcaaatgcataccttgcaattatagtacattactacatgcc |
32771565 |
T |
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| Q |
570 |
atacttcacaagtattat |
587 |
Q |
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| T |
32771566 |
atacttcacaagtattat |
32771583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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