View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13142_low_7 (Length: 405)
Name: NF13142_low_7
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13142_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 23 - 362
Target Start/End: Complemental strand, 52035152 - 52034802
Alignment:
| Q |
23 |
agtggacaaatctaagacgaaactcacaagtcctcgttgaacagcaacaggaacaaatcgattgatatctttataatggcatccagtgcatttgatgcga |
122 |
Q |
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| T |
52035152 |
agtggacaaatctaagatgaaactcacaagtcctcgttgaacagcaacaggaacaaatcgattgatatcttta-aatggcatccagtgcatttgatgcga |
52035054 |
T |
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| Q |
123 |
aatgatcggatgggcaaggcg------------agcatgacggagttgacaaattcaaactaatattgtaggacttttatcgctcaagacattgcctttc |
210 |
Q |
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| T |
52035053 |
aatgatcggatgggcaaggcggggtcacgcaggagcatgacggagttgacaaattcaaactaatattgtaggacttttatcgctcaagacattgcctttc |
52034954 |
T |
|
| Q |
211 |
acaccaggggaagttgatgcagttttctcagacttccttcaaaacattgaggacatggatgaattgggaggatgtcatccgtgtgatcaatttctgcata |
310 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034953 |
acgccaggggaagttgatgcagttttctcagacttccttcaaaacattgaggaaatggatgaattgggaggatgtcatccgtgtgatcaatttctgcata |
52034854 |
T |
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| Q |
311 |
attataactttcaaaaactataatccttagctaggaaaaaatccatcttctc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034853 |
attataactttcaaaaactataatccttagctaggaaaaaatccatcttctc |
52034802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 12483651 - 12483623
Alignment:
| Q |
63 |
acagcaacaggaacaaatcgattgatatc |
91 |
Q |
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| T |
12483651 |
acagcaacaggaacaaatcgattgatatc |
12483623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 12485973 - 12485945
Alignment:
| Q |
63 |
acagcaacaggaacaaatcgattgatatc |
91 |
Q |
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| T |
12485973 |
acagcaacaggaacaaatcgattgatatc |
12485945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 12505081 - 12505053
Alignment:
| Q |
63 |
acagcaacaggaacaaatcgattgatatc |
91 |
Q |
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| T |
12505081 |
acagcaacaggaacaaatcgattgatatc |
12505053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 12507405 - 12507377
Alignment:
| Q |
63 |
acagcaacaggaacaaatcgattgatatc |
91 |
Q |
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| T |
12507405 |
acagcaacaggaacaaatcgattgatatc |
12507377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 12658291 - 12658263
Alignment:
| Q |
63 |
acagcaacaggaacaaatcgattgatatc |
91 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12658291 |
acagcaacaggaacaaatcgattgatatc |
12658263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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