View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13142_low_9 (Length: 355)
Name: NF13142_low_9
Description: NF13142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13142_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 52725357 - 52725545
Alignment:
| Q |
7 |
tagataattcttcttaattcttctccaatacatgcataaaacatggttgatcattgggaaattagaggataattcttcttattatgcaaaagcaatgcca |
106 |
Q |
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| T |
52725357 |
tagataattcttcttaattcttctccaatacatgcataaaacatggttgatcattgggaaattagaggataattcttcttattatgcaaaagcaatgcca |
52725456 |
T |
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| Q |
107 |
aaccaattgaacacatcattatcaacaatacaatcaacattctcttaaacctgatagaatttaaaaattagatgatattttgattcagt |
195 |
Q |
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| T |
52725457 |
aaccaattgaacacatcattatcaacaatacaatcaacattctcttaaacccgatagaattttaaaataagaggatattttgattcagt |
52725545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 196 - 355
Target Start/End: Original strand, 52725591 - 52725747
Alignment:
| Q |
196 |
ttcataatattgaattttaaaatggacaaatagtnnnnnnnnnnnntgacttatcaacataaacataatcaatgttcaaaaccaatcccaaggaccatga |
295 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52725591 |
ttcataatattgaattttaaaatggacaaatagtaaaaaaaaa---tgactgatcagcataaacataatcaatgttcaaaaccaatcccaaggagcatga |
52725687 |
T |
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| Q |
296 |
gtcatgactattgtagcacaagtgaaagggcgtcggagaaaatcatgaattacaaaaatt |
355 |
Q |
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| T |
52725688 |
gtcatgactattgtagcacaagtgaaagggcgtcagagaaaatcatgaattagaaaaatt |
52725747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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