View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13143_high_2 (Length: 432)
Name: NF13143_high_2
Description: NF13143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13143_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 5333551 - 5333960
Alignment:
| Q |
1 |
aaaaggcttaatcaaaattgcattcgcaggttgattcgaaaacgaaactggattatcatcaacaataacaaccttcttcaaatctcttcccacaaaaccc |
100 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5333551 |
aaaaggcttaatcaaaatcgcatttgcaggttgattcgaaaacgaaactggattatcatcaacaataacaaccttcttcaaatctcttcccacaaaaccc |
5333650 |
T |
|
| Q |
101 |
aaatctttcacaagcttcccatcaacattcctacacgaatccctataaagccgatgcgaaataaacccattccggtccagccggtccacaaccaaactcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5333651 |
aaatctttcacaagcttcccatcaacattcctacacgaatccctataaagccgatgcgaaataaacccattccggtccagccggtccacaaccaaactcg |
5333750 |
T |
|
| Q |
201 |
catactccttcaacgcagctgtaaaaaccaccacctcatatttcaacgctaacgcttccaacaattcgtcaatccccggtcgcttccgcacgtagaaatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5333751 |
catactccttcaacgcagctgtaaaaaccaccacctcatatttcaacgctaacgcttccaacagttcgtcaatccccggtcgcttccgcacgtagaaatc |
5333850 |
T |
|
| Q |
301 |
catcggttcaccgtcaatcaccggccggacaacaaaatcgaatttctccggcggtggtgaagtttttgaatgaaccaaagtttcatctaaatcaagaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5333851 |
catcggttcaccgtcaatcaccggccggacaacaaaatcgaatttctccggcggtggtgaagtttttgaatgaaccaaagtttcatctaaatcaagaaaa |
5333950 |
T |
|
| Q |
401 |
atggttttcc |
410 |
Q |
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|||||||||| |
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| T |
5333951 |
atggttttcc |
5333960 |
T |
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