View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13143_high_5 (Length: 378)

Name: NF13143_high_5
Description: NF13143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13143_high_5
NF13143_high_5
[»] chr2 (2 HSPs)
chr2 (192-357)||(22018619-22018784)
chr2 (192-350)||(20714180-20714338)
[»] chr4 (2 HSPs)
chr4 (196-269)||(21261870-21261943)
chr4 (15-82)||(21261605-21261672)
[»] scaffold0097 (1 HSPs)
scaffold0097 (192-350)||(18019-18177)
[»] chr8 (2 HSPs)
chr8 (192-350)||(22527881-22528039)
chr8 (192-350)||(25990502-25990660)
[»] chr6 (1 HSPs)
chr6 (192-350)||(33094531-33094689)
[»] chr5 (1 HSPs)
chr5 (192-350)||(13173069-13173227)
[»] chr3 (1 HSPs)
chr3 (192-350)||(20986617-20986775)
[»] scaffold1789 (1 HSPs)
scaffold1789 (192-350)||(1005-1163)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 192 - 357
Target Start/End: Original strand, 22018619 - 22018784
Alignment:
Q  192 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 291  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22018619 ggatagtcgggcacaatgagatgtaacatttctttgtggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 22018718  T
Q  292 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccat 357  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  22018719 atactttaggcaaggaagttggttcaacaccaatttcaactaattcagcccaaatatctccaccat 22018784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 350
Target Start/End: Original strand, 20714180 - 20714338
Alignment:
Q  192 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 291  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  20714180 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 20714279  T
Q  292 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatct 350  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| ||||    
T  20714280 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatct 20714338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 21261870 - 21261943
Alignment:
Q  196 agtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatca 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21261870 agtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatca 21261943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 21261605 - 21261672
Alignment:
Q  15 tatcttccactttatagcaccagaatgacaataataattaactaccaaaacaattgtcatcaaactat 82  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21261605 tatctttcactttatagcaccagaatgacaataataattaattaccaaaacaattgtcatcaaactat 21261672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 350
Target Start/End: Original strand, 18019 - 18177
Alignment:
Q  192 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 291  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  18019 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 18118  T
Q  292 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatct 350  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| ||||    
T  18119 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatct 18177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 350
Target Start/End: Original strand, 22527881 - 22528039
Alignment:
Q  192 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 291  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  22527881 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 22527980  T
Q  292 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatct 350  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| ||||    
T  22527981 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatct 22528039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 350
Target Start/End: Original strand, 25990502 - 25990660
Alignment:
Q  192 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 291  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  25990502 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 25990601  T
Q  292 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatct 350  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| ||||    
T  25990602 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatct 25990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 350
Target Start/End: Complemental strand, 33094689 - 33094531
Alignment:
Q  192 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 291  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  33094689 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 33094590  T
Q  292 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatct 350  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| ||||    
T  33094589 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatct 33094531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 350
Target Start/End: Original strand, 13173069 - 13173227
Alignment:
Q  192 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 291  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  13173069 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 13173168  T
Q  292 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatct 350  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| ||||    
T  13173169 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatct 13173227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 350
Target Start/End: Complemental strand, 20986775 - 20986617
Alignment:
Q  192 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 291  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  20986775 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 20986676  T
Q  292 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatct 350  Q
    | ||   |||||||||||||  |||||||||||| ||||| || | |||||||| ||||    
T  20986675 agacacaaggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatct 20986617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1789 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1789
Description:

Target: scaffold1789; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 350
Target Start/End: Complemental strand, 1163 - 1005
Alignment:
Q  192 ggatagtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 291  Q
    |||||||  |||||||||  | ||||||||||||| || ||||||| ||||||||||||||||||||||||||| || | ||  | |||||||| |||||    
T  1163 ggatagttcggcacaatgtaaggtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgcttctggatgttgaacaaggtgcatgt 1064  T
Q  292 atactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatct 350  Q
    | ||   ||||||||| |||  |||||||||||| ||||| || | |||||||| ||||    
T  1063 agacacaaggcaaggatgcttcttcaacaccaatctcgaccaagttagcccaaacatct 1005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University