View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13143_low_1 (Length: 529)

Name: NF13143_low_1
Description: NF13143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13143_low_1
NF13143_low_1
[»] chr1 (6 HSPs)
chr1 (1-255)||(25590468-25590722)
chr1 (342-518)||(25590279-25590455)
chr1 (405-518)||(44540815-44540928)
chr1 (405-518)||(50780712-50780825)
chr1 (145-230)||(44541029-44541114)
chr1 (34-255)||(50780901-50781133)
[»] scaffold0019 (1 HSPs)
scaffold0019 (15-255)||(59135-59375)
[»] chr4 (11 HSPs)
chr4 (31-226)||(25170460-25170658)
chr4 (33-251)||(26903739-26903960)
chr4 (56-255)||(7043004-7043201)
chr4 (404-518)||(25170765-25170879)
chr4 (405-518)||(5725298-5725411)
chr4 (424-518)||(6681155-6681249)
chr4 (254-337)||(18149910-18149993)
chr4 (31-255)||(50912180-50912415)
chr4 (31-255)||(6681344-6681580)
chr4 (405-518)||(50912491-50912605)
chr4 (144-254)||(5725486-5725596)
[»] chr7 (9 HSPs)
chr7 (15-226)||(8266118-8266329)
chr7 (405-518)||(293740-293853)
chr7 (405-518)||(35894827-35894940)
chr7 (405-489)||(8266434-8266518)
chr7 (405-508)||(43087684-43087787)
chr7 (145-255)||(293554-293664)
chr7 (144-226)||(43087497-43087579)
chr7 (163-255)||(35894659-35894751)
chr7 (186-256)||(45938247-45938317)
[»] chr5 (2 HSPs)
chr5 (33-255)||(22664444-22664669)
chr5 (395-505)||(22664268-22664378)
[»] chr8 (7 HSPs)
chr8 (36-231)||(25480117-25480317)
chr8 (395-507)||(25480378-25480490)
chr8 (405-497)||(37186266-37186358)
chr8 (254-337)||(5582303-5582386)
chr8 (144-255)||(37186434-37186545)
chr8 (405-518)||(37790567-37790677)
chr8 (145-255)||(37790753-37790863)
[»] chr3 (8 HSPs)
chr3 (405-518)||(18649068-18649181)
chr3 (254-337)||(28374398-28374481)
chr3 (254-337)||(28382220-28382303)
chr3 (405-508)||(11748283-11748386)
chr3 (144-255)||(11748462-11748573)
chr3 (144-254)||(18649256-18649366)
chr3 (31-108)||(11748621-11748698)
chr3 (405-448)||(32371904-32371947)
[»] chr2 (5 HSPs)
chr2 (405-518)||(296307-296420)
chr2 (405-518)||(29960903-29961016)
chr2 (254-337)||(33876739-33876822)
chr2 (145-255)||(29960721-29960831)
chr2 (145-255)||(296121-296231)
[»] chr6 (3 HSPs)
chr6 (13-255)||(11186469-11186724)
chr6 (162-251)||(11749285-11749374)
chr6 (163-239)||(21462375-21462451)
[»] scaffold0336 (1 HSPs)
scaffold0336 (405-518)||(41-155)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 25590722 - 25590468
Alignment:
Q  1 ctattatgcgcaatagaacacagtttctgctctaacaattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25590722 ctattatgcgcaatagaacacagtttctgctctaacaattggtatagagaatttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcatt 25590623  T
Q  101 cttgggaaacattgagtcaggtgtgagcattgatttcttgaaaaagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25590622 cttgggaaacattgagtcaggtgtgagcattgatttcttgaaaaagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaa 25590523  T
Q  201 ctgggaacgatggagtgccttgatgagatctctatttggagaacaagatgtgagt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25590522 ctgggaacgatggagtgccttgatgagatctctatttggagaacaagatgtgagt 25590468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 342 - 518
Target Start/End: Complemental strand, 25590455 - 25590279
Alignment:
Q  342 aatggctatcaaaatttgggggtaaatccaattgaagcacaaagattgaccttcaaagaagcaaagaagaaagattgtaaggcactgttttacattcaac 441  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25590455 aatggctatgaaaatttgggggtaaatccaattgaagcacaaagattgaccttcaaagaagcaaagaagaaagattgtaaggcactgttttacattcaac 25590356  T
Q  442 aaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttgggatatactagagaat 518  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  25590355 aaaatgttaataatcaacattttaagaagatttcacaagcaacaagatccaaagaaacttgggatatgctagagaat 25590279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 405 - 518
Target Start/End: Complemental strand, 44540928 - 44540815
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||||||||||||||| ||  |||| |||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||||| | ||||    
T  44540928 aagaagaaagattgtaaagctttgttctacattcaacaaaatgttgataatcaacattttgataagatttcaaaagcaacaagatccaaagaagcatggg 44540829  T
Q  505 atatactagagaat 518  Q
    |||| || ||||||    
T  44540828 atattctggagaat 44540815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 405 - 518
Target Start/End: Complemental strand, 50780825 - 50780712
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||||||||||||||| ||  |||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||  |||||||||||| | || |    
T  50780825 aagaagaaagattgtaaagctatgttctacattcaacaaaatgttgataatcaacattttgagaagatttcaaaagcaaatagatccaaagaagcatgag 50780726  T
Q  505 atatactagagaat 518  Q
    |||| || ||||||    
T  50780725 atattctggagaat 50780712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 44541114 - 44541029
Alignment:
Q  145 agcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatc 230  Q
    ||||||||||| |  || |||||||||||||| ||  || ||||||||| |||||||||||||||||||||||| |||||||||||    
T  44541114 agcaagatgaacacaaacggttttggatcaaatatcttgattcttgatggcaagaactgggaacgatggagtgctttgatgagatc 44541029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 255
Target Start/End: Complemental strand, 50781133 - 50780901
Alignment:
Q  34 aacaattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattgagtcaggtgtgagcattga 133  Q
    ||||||||||| ||||| | ||| || ||||  ||||||| |||||||||  ||||||||||||||  ||||||| ||  |||| ||||||| | |||||    
T  50781133 aacaattggtatagagagcctgg-ttgaatcttagggaaacacgagtgaaaagtgaggggaatcatcattgggaatcacagagtgaggtgtgtgtattga 50781035  T
Q  134 ---------tttcttgaaa---aagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgcctt 221  Q
             ||||||||||   |||||||||||| |  ||  ||||||||||||| ||  | |||||||||| |||||||||||||| ||||||||| ||    
T  50781034 tttctctgttttcttgaaaattaagcaagatgaacacaaacagttttggatcaaatatcttagttcttgatggcaagaactgggaacaatggagtgcttt 50780935  T
Q  222 gatgagatctctatttggagaacaagatgtgagt 255  Q
    |||||||||  | ||||| |  ||||||||||||    
T  50780934 gatgagatcattgtttggcgcgcaagatgtgagt 50780901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 59375 - 59135
Alignment:
Q  15 agaacacagtttctgctctaacaattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattg 114  Q
    |||||||| ||| || |||||||||||||| ||||| | ||||||||||| |||||||| |||||||||||||||||||||||||  ||| |||||| ||    
T  59375 agaacacaatttatgttctaacaattggtatagagagcctgggttaaatccaagggaaacacgagtgaagtgtgaggggaatcatcattgagaaacactg 59276  T
Q  115 agtcaggtgtgagcattgatttcttgaaaaagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatgga 214  Q
    ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  59275 agtgaggtgtgagtattgatttcttgagaaagcaagatgaatagcaatggttttggatcaaacatcctggttcttgatgacaagaactgggaacgatgga 59176  T
Q  215 gtgccttgatgagatctctatttggagaacaagatgtgagt 255  Q
    |||| |||||||||||| |||||||||  ||||||||||||    
T  59175 gtgctttgatgagatctttatttggagcgcaagatgtgagt 59135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 31 - 226
Target Start/End: Original strand, 25170460 - 25170658
Alignment:
Q  31 tctaacaattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattgagtcaggtgtgagcat 130  Q
    |||||||||||||| ||||| | ||||||||||  |||||||| |||||||||||||||||||||||||  |||||||||| ||||| ||||||||||||    
T  25170460 tctaacaattggtatagagagcctgggttaaattcaagggaaacacgagtgaagtgtgaggggaatcatcattgggaaacactgagtaaggtgtgagcat 25170559  T
Q  131 tgatttcttgaaaaagcaagatgaatagcaatggttttggatcaaacattctggttcttgat----gacaagaactgggaacgatggagtgccttgatga 226  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||    |  |||||||||||| | |||||||| |||||||    
T  25170560 tgatttctt-agaaagcaagatgaatagcaatggttttggaacaaacattctgattcttgattgatgggaagaactgggaaagttggagtgcattgatga 25170658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 26903739 - 26903960
Alignment:
Q  33 taacaattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattgagtcaggtgtgagcattg 132  Q
    |||||||||||| ||||| |||||||| |||| ||| |||| |||||||||||||||||||||||||  || | ||||| ||||| ||||||| ||||||    
T  26903739 taacaattggtatagagatcttgggttgaatctaagagaaacacgagtgaagtgtgaggggaatcatcattagaaaacactgagtgaggtgtgtgcattg 26903838  T
Q  133 atttcttg---aaaaagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagat 229  Q
    ||||||||   |||||| | |||||| |  || |||||| ||||||||||| |||||||| |||  ||||| ||||||||||| ||||||||||||||||    
T  26903839 atttcttgaacaaaaagtatgatgaacaataacggtttttgatcaaacattttggttcttaatgttaagaaatgggaacgatgtagtgccttgatgagat 26903938  T
Q  230 ctctatttggagaacaagatgt 251  Q
     | | ||||| | |||||||||    
T  26903939 atttgtttggcgcacaagatgt 26903960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 56 - 255
Target Start/End: Complemental strand, 7043201 - 7043004
Alignment:
Q  56 ggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattgagtcaggtgtgagcattgatttcttgaaaaagcaagatgaa 155  Q
    ||||||||| |||||||| ||||||||||| |||||| ||||||| | |||||||  ||||| |||||||||  |||||||||||| || ||||||||||    
T  7043201 ggttaaatctaagggaaacacgagtgaagtttgagggaaatcattat-gggaaactctgagtgaggtgtgagtcttgatttcttgataa-gcaagatgaa 7043104  T
Q  156 tagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaacaagatgtgagt 255  Q
    || |||||||| ||||| ||||||||| | |||||||| ||||||||  ||||| || ||||| ||||||| |||||| ||||||| |||||||| ||||    
T  7043103 taacaatggttatggattaaacattctagatcttgatggcaagaactaagaacgctgaagtgctttgatgaaatctctgtttggagtacaagatgcgagt 7043004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 25170765 - 25170879
Alignment:
Q  404 aaagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttgg 503  Q
    ||||||||||||||| |||||| || ||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||    
T  25170765 aaagaagaaagattgcaaggcattgatttacattcaacataatgttgataatcaaaattttgagaagatttcaaaggcaacaagatccaaagaagcttgg 25170864  T
Q  504 gatatactagagaat 518  Q
    |||||||| ||||||    
T  25170865 gatatactggagaat 25170879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 405 - 518
Target Start/End: Complemental strand, 5725411 - 5725298
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||||||||||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||||||| | ||||| |||||||||||| | ||||    
T  5725411 aagaagaaagattgtaaagctctgttctacattcaacaaaatattgataatcaacattttgagaagatttcaaaagcaactagatccaaagaagcatggg 5725312  T
Q  505 atatactagagaat 518  Q
    |||| || ||||||    
T  5725311 atattctggagaat 5725298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 424 - 518
Target Start/End: Complemental strand, 6681249 - 6681155
Alignment:
Q  424 cactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttgggatatactagagaat 518  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||||||||| ||| | ||||||||||| ||||||    
T  6681249 cactgttttacattcaacaaaatgttgataatcaacattttgagaatatttcaaaagcaacaagatccaaggaagcatgggatatactggagaat 6681155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 254 - 337
Target Start/End: Original strand, 18149910 - 18149993
Alignment:
Q  254 gttctaatgtatatacaacgaatttcnnnnnnnatacttcttattactaaataatgcccataaatttcataataggtaccaaaa 337  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18149910 gttctaatgtatatacaacgaatttctttttttatacttcttattactaaataatgcccataaatttcataataggtaccaaaa 18149993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 255
Target Start/End: Original strand, 50912180 - 50912415
Alignment:
Q  31 tctaacaattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattgagtcaggtgtgagcat 130  Q
    |||||||||||||| |||||   |||||||||||  ||||||| |||||||||  |||||| |||||||  |||||||||| ||||| ||||||| | ||    
T  50912180 tctaacaattggtatagagagtctgggttaaatcttagggaaacacgagtgaaaagtgaggagaatcatcattgggaaacactgagtgaggtgtgtgtat 50912279  T
Q  131 tgatttct---------tgaaaa--agcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgcc 219  Q
    ||||||||         ||| |   ||| ||||||| |  ||  ||||||||||||| ||  |||||||||||| ||||||||||||||||||||| ||     
T  50912280 tgatttctcttatttcttgagatttagcgagatgaacactaacagttttggatcaaatatcttggttcttgatggcaagaactgggaacgatggagagct 50912379  T
Q  220 ttgatgagatctctatttggagaacaagatgtgagt 255  Q
    |||||||||||| | ||||| | |||||||||||||    
T  50912380 ttgatgagatctttgtttggcgcacaagatgtgagt 50912415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 255
Target Start/End: Complemental strand, 6681580 - 6681344
Alignment:
Q  31 tctaacaattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattgagtcaggtgtgagcat 130  Q
    |||||||||||||| ||||| | ||| | |||||  ||||||| | |||||||  ||||||||||||||  |||||||||| ||||| || |||| | ||    
T  6681580 tctaacaattggtatagagagcctggttcaaatcttagggaaacatgagtgaaaagtgaggggaatcatcattgggaaacactgagtgagatgtgtgtat 6681481  T
Q  131 tgatttct---------tgaaaa---agcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgc 218  Q
    ||||||||         ||| ||   ||||||||||| |  || |||||||||||||||||  |||||||||||| ||||||||| |||||||||| ||     
T  6681480 tgatttctctgatttcttgagaattaagcaagatgaacactaacggttttggatcaaacatcttggttcttgatggcaagaactgagaacgatggactgt 6681381  T
Q  219 cttgatgagatctctatttggagaacaagatgtgagt 255  Q
     |||||||||||  | ||||| |  ||||||||||||    
T  6681380 tttgatgagatcattgtttggcgcgcaagatgtgagt 6681344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 518
Target Start/End: Original strand, 50912491 - 50912605
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaa-cttgg 503  Q
    |||||||||||||| || || || || |||||||||||||||||| ||||||| |||||||||||||| ||  |||| ||| |||||||||||| | |||    
T  50912491 aagaagaaagattgcaaagctcttttctacattcaacaaaatgttgataatcagcattttgagaagatatccaaggcgacaggatccaaagaaagcatgg 50912590  T
Q  504 gatatactagagaat 518  Q
    ||||| || ||||||    
T  50912591 gatattctggagaat 50912605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 5725596 - 5725486
Alignment:
Q  144 aagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaa 243  Q
    |||||||||||| |  || |||||||||||||||||  | |||||||||| |||||||||||| |||||||| || |||||||||||  | ||||| |      
T  5725596 aagcaagatgaacacaaacggttttggatcaaacatcttagttcttgatggcaagaactgggagcgatggagcgctttgatgagatcgttgtttggcgcg 5725497  T
Q  244 caagatgtgag 254  Q
    |||||||||||    
T  5725496 caagatgtgag 5725486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 8266118 - 8266329
Alignment:
Q  15 agaacacagtttctgctctaacaattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattg 114  Q
    |||||||||||| || ||| |||||||||| ||||||  ||| ||||||| |||||||| || ||||||||||||||||||||||  |||||||||| ||    
T  8266118 agaacacagtttatgttctgacaattggtatagagaatctggattaaatctaagggaaacacaagtgaagtgtgaggggaatcatcgttgggaaacactg 8266217  T
Q  115 agtcaggtgtgagcattgatttcttgaaaaagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatgga 214  Q
    ||| |||||| ||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||   ||||||||  ||||||| |||| | ||||    
T  8266218 agtgaggtgtaagcatagatttcttgagaaagcaagatgaataacaatggttttggaacaaacattcttactcttgatgggaagaactaggaaaggtgga 8266317  T
Q  215 gtgccttgatga 226  Q
    |||| |||||||    
T  8266318 gtgcattgatga 8266329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 405 - 518
Target Start/End: Original strand, 293740 - 293853
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||||||||||| ||| || || ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| ||| | || |    
T  293740 aagaagaaagattataaagctctcttttacattcaacaaaatgttgataatcaacattttgagaagatttcaaaagcaacaagatccaaggaagcatgag 293839  T
Q  505 atatactagagaat 518  Q
    |||| |||||||||    
T  293840 atattctagagaat 293853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 405 - 518
Target Start/End: Original strand, 35894827 - 35894940
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||| | || || |||||||||||| | || |    
T  35894827 aagaagaaagattgtaaagctctgttctacattcaacaaaatgttgataatcaacattttgagaagatttcaaaagccactagatccaaagaagcatgag 35894926  T
Q  505 atatactagagaat 518  Q
    |||| || ||||||    
T  35894927 atattctggagaat 35894940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 405 - 489
Target Start/End: Original strand, 8266434 - 8266518
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagat 489  Q
    |||||||||||||| ||| || ||||| ||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||||    
T  8266434 aagaagaaagattgcaagacattgtttaacattcagcaaaatgttgataattaacattttgagaagatttcaaaggcaacaagat 8266518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 405 - 508
Target Start/End: Original strand, 43087684 - 43087787
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||||||| | ||||| || ||||| || ||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||| |||||| | ||||    
T  43087684 aagaagaaaaactgtaaagctctgttctatattcaacaaaatgttgataatcaacattttgagaagatttcaaaagcaactagatctaaagaagcatggg 43087783  T
Q  505 atat 508  Q
    ||||    
T  43087784 atat 43087787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 293554 - 293664
Alignment:
Q  145 agcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaac 244  Q
    ||||||||||| |  || ||||||||||||||| |  |||||||||||| |||||||||||| ||||||||||| |||||||||||  | ||||| |  |    
T  293554 agcaagatgaacactaacggttttggatcaaacgtcttggttcttgatggcaagaactgggatcgatggagtgctttgatgagatcattgtttggcgcgc 293653  T
Q  245 aagatgtgagt 255  Q
    |||||||||||    
T  293654 aagatgtgagt 293664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 43087497 - 43087579
Alignment:
Q  144 aagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatga 226  Q
    |||||||||||| |  || |||||||| ||||||||  | |||||||||| |||||| ||||||||||||||||| |||||||    
T  43087497 aagcaagatgaacacaaacggttttggctcaaacatcttagttcttgatggcaagaattgggaacgatggagtgctttgatga 43087579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 35894659 - 35894751
Alignment:
Q  163 ggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaacaagatgtgagt 255  Q
    |||||||||||||||||  |  ||||||||| |||||| ||||||||||||||||  |||||||||||  | ||||| |  ||||||||||||    
T  35894659 ggttttggatcaaacatcttaattcttgatggcaagaattgggaacgatggagtgatttgatgagatcattgtttggtgcgcaagatgtgagt 35894751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 45938247 - 45938317
Alignment:
Q  186 tcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaacaagatgtgagtt 256  Q
    |||||||| ||||||||||||||||||||| || |||||||||||  | ||||| |  |||||||||||||    
T  45938247 tcttgatggcaagaactgggaacgatggagcgctttgatgagatcgttgtttggcgcgcaagatgtgagtt 45938317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 33 - 255
Target Start/End: Complemental strand, 22664669 - 22664444
Alignment:
Q  33 taacaattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattgagtcaggtgtgagcattg 132  Q
    |||||||| ||| ||||| | |||||| |||| |||||||| | || |||||||| |||||||||||  |||| ||||| ||||| ||||||| ||||||    
T  22664669 taacaattagtatagagatcatgggttcaatctaagggaaacatgaatgaagtgtaaggggaatcatcattggaaaacactgagtgaggtgtgtgcattg 22664570  T
Q  133 atttcttgaaaaag---caagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagat 229  Q
    |||||||||| |||   ||||||||| |  ||  ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||    
T  22664569 atttcttgaagaagaagcaagatgaacaataaccgttttggatcaaacattctagttcttgatggcaaaaactgggaacgatggagtgccttgatgagat 22664470  T
Q  230 ctctatttggagaacaagatgtgagt 255  Q
     | | |||||   |||||||||||||    
T  22664469 atttgtttggcacacaagatgtgagt 22664444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 505
Target Start/End: Complemental strand, 22664378 - 22664268
Alignment:
Q  395 caaagaagcaaagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaa 494  Q
    ||||||| ||||||| ||||| |||||  |  | |||||||||| |||||||||| ||||||||||||||||||| || ||| |||||| ||||||||||    
T  22664378 caaagaatcaaagaataaagactgtaaaactatattttacattccacaaaatgttgataatcaacattttgagaatatatcaaaggcaataagatccaaa 22664279  T
Q  495 gaaacttggga 505  Q
    ||| |||||||    
T  22664278 gaagcttggga 22664268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 36 - 231
Target Start/End: Original strand, 25480117 - 25480317
Alignment:
Q  36 caattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaaacattgagtcaggtgtgagcattgatt 135  Q
    ||||||||| ||||| | ||||||||||| |||||||  || ||||||||||||||||||||||  |||| ||||| ||||| ||||||| ||| |||||    
T  25480117 caattggtatagagagcctgggttaaatctaagggaagcacaagtgaagtgtgaggggaatcatcattggaaaacactgagtgaggtgtgtgcactgatt 25480216  T
Q  136 tctt---gaaaaagcaagatga--atagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatc 230  Q
    ||||   ||| |||||||||||  | |  || |||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||||||| |||||    
T  25480217 tcttgaagaagaagcaagatgatcacaataacggttttggatcaaacattctagttcttgatggaaagaactgggaacgattgagtgccttgatcagatc 25480316  T
Q  231 t 231  Q
    |    
T  25480317 t 25480317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 395 - 507
Target Start/End: Original strand, 25480378 - 25480490
Alignment:
Q  395 caaagaagcaaagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaa 494  Q
    ||||||| ||||||||||||| | ||| || |||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||| |||    
T  25480378 caaagaatcaaagaagaaagactataaagctctgttttacattcaacaaaatgttgataatcaacattttgtgaagatatcaaaggcaacaagatctaaa 25480477  T
Q  495 gaaacttgggata 507  Q
    ||| |||||||||    
T  25480478 gaagcttgggata 25480490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 405 - 497
Target Start/End: Complemental strand, 37186358 - 37186266
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaa 497  Q
    ||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||    
T  37186358 aagaagaaagattgtaaagctctgttctacattcaacaaaatgttgataatcaacattttgagaagatttcaaaagcaactagatccaaagaa 37186266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 5582386 - 5582303
Alignment:
Q  254 gttctaatgtatatacaacgaatttcnnnnnnnatacttcttattactaaataatgcccataaatttcataataggtaccaaaa 337  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5582386 gttctaatgtatatacaacgaatttctttttttatacttcttattactaaataatgcccataaatttcataataggtaccaaaa 5582303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 255
Target Start/End: Complemental strand, 37186545 - 37186434
Alignment:
Q  144 aagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaa 243  Q
    |||||||||||| |  || |||||||||||||||||  | |||||| ||| |||||||||||||||||||||||| |||||||||||  | ||||| |      
T  37186545 aagcaagatgaacataaacggttttggatcaaacatcttagttcttcatggcaagaactgggaacgatggagtgctttgatgagatcattgtttggcgcg 37186446  T
Q  244 caagatgtgagt 255  Q
    ||||||||||||    
T  37186445 caagatgtgagt 37186434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 405 - 518
Target Start/End: Complemental strand, 37790677 - 37790567
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||||||||||||||| || ||||| ||||||||||||||| || |||||   |||||||||||||||||| | ||||| ||||| |||||| | ||||    
T  37790677 aagaagaaagattgtaaagctctgttctacattcaacaaaatattgataat---cattttgagaagatttcaaaagcaactagatctaaagaagcatggg 37790581  T
Q  505 atatactagagaat 518  Q
    |||| || ||||||    
T  37790580 atattctggagaat 37790567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 37790863 - 37790753
Alignment:
Q  145 agcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaac 244  Q
    ||||||||||| |  || |||||||||||||| ||  || ||||||||| |||||| ||||||||||||||||| |||||| ||||  | ||||| |  |    
T  37790863 agcaagatgaacacaaacggttttggatcaaatatcttgattcttgatggcaagaattgggaacgatggagtgctttgatgtgatcattgtttggcgcgc 37790764  T
Q  245 aagatgtgagt 255  Q
    |||||||||||    
T  37790763 aagatgtgagt 37790753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 405 - 518
Target Start/End: Complemental strand, 18649181 - 18649068
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||||||||||||||| || ||||| ||||||||||||||| || |||||||||||||||||||||||||| | ||||| |||||||||||| | ||||    
T  18649181 aagaagaaagattgtaaagctctgttctacattcaacaaaatattgataatcaacattttgagaagatttcaaaagcaactagatccaaagaagcatggg 18649082  T
Q  505 atatactagagaat 518  Q
    |||| || ||||||    
T  18649081 atattctggagaat 18649068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 28374481 - 28374398
Alignment:
Q  254 gttctaatgtatatacaacgaatttcnnnnnnnatacttcttattactaaataatgcccataaatttcataataggtaccaaaa 337  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28374481 gttctaatgtatatacaacgaatttctttttttatacttcttattactaaataatgcccataaatttcataataggtaccaaaa 28374398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 28382303 - 28382220
Alignment:
Q  254 gttctaatgtatatacaacgaatttcnnnnnnnatacttcttattactaaataatgcccataaatttcataataggtaccaaaa 337  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28382303 gttctaatgtatatacaacgaatttctttttttatacttcttattactaaataatgcccataaatttcataataggtaccaaaa 28382220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 405 - 508
Target Start/End: Complemental strand, 11748386 - 11748283
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||| ||||||||||| || ||||| || ||||||||||||||| |||||||| ||||||||||||||||| | ||||| |||| ||||||| | ||||    
T  11748386 aagaataaagattgtaaagctctgttctatattcaacaaaatgttgataatcaatattttgagaagatttcaaaagcaactagattcaaagaagcatggg 11748287  T
Q  505 atat 508  Q
    ||||    
T  11748286 atat 11748283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 144 - 255
Target Start/End: Complemental strand, 11748573 - 11748462
Alignment:
Q  144 aagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaa 243  Q
    |||||||||||| |  || |||||| ||||||||||  | |||||||||| ||||||||| |||||||||||||| |||||||||||  | ||||| |      
T  11748573 aagcaagatgaacacaaacggttttagatcaaacatcttagttcttgatggcaagaactgagaacgatggagtgctttgatgagatcattgtttggcgcg 11748474  T
Q  244 caagatgtgagt 255  Q
    ||||||||||||    
T  11748473 caagatgtgagt 11748462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 18649366 - 18649256
Alignment:
Q  144 aagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaa 243  Q
    |||||||||||| |  || |||||||||||||||||  | |||||||||| |||||||||||| |||||||| || |||||||||||  | ||||| |      
T  18649366 aagcaagatgaacacaaacggttttggatcaaacatcttagttcttgatggcaagaactgggagcgatggagcgctttgatgagatcgttgtttggcgcg 18649267  T
Q  244 caagatgtgag 254  Q
    |||||||||||    
T  18649266 caagatgtgag 18649256  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 11748698 - 11748621
Alignment:
Q  31 tctaacaattggtacagagaacttgggttaaatcaaagggaaatacgagtgaagtgtgaggggaatcattcttgggaa 108  Q
    |||||||||||||| ||||| | |||||| ||||  ||||||| |||||||||  ||||||||||||||  |||||||    
T  11748698 tctaacaattggtatagagagcctgggttgaatcttagggaaacacgagtgaaaagtgaggggaatcatcattgggaa 11748621  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 448
Target Start/End: Complemental strand, 32371947 - 32371904
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgt 448  Q
    |||||||||||||| |||||| |||| |||||||||||||||||    
T  32371947 aagaagaaagattgcaaggcattgttctacattcaacaaaatgt 32371904  T

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Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 405 - 518
Target Start/End: Original strand, 296307 - 296420
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||||||||||||||| || | ||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||| | ||||    
T  296307 aagaagaaagattgtaaagctcagttctacattcaacaaaatgttgataatcaacattttgagaagatttcaaaagcaactagatccaaagaagcatggg 296406  T
Q  505 atatactagagaat 518  Q
    |||| || ||||||    
T  296407 atattctggagaat 296420  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 405 - 518
Target Start/End: Original strand, 29960903 - 29961016
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaacttggg 504  Q
    ||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||| |  |||| |||||||||||| | ||||    
T  29960903 aagaagaaagattgtaaagctctgttctacattcaacaaaatgttgataatcaacattttgagaagatttcaaaatcaactagatccaaagaagcatggg 29961002  T
Q  505 atatactagagaat 518  Q
    |||| || ||||||    
T  29961003 atattctggagaat 29961016  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 33876822 - 33876739
Alignment:
Q  254 gttctaatgtatatacaacgaatttcnnnnnnnatacttcttattactaaataatgcccataaatttcataataggtaccaaaa 337  Q
    ||||||||||||||||||| |||||        |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33876822 gttctaatgtatatacaacaaatttttttttttatacttcttattactaaatattgcccataaatttcataataggtaccaaaa 33876739  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 29960721 - 29960831
Alignment:
Q  145 agcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaac 244  Q
    ||||||||||| |  || |||||||||||||| ||  || ||||||||| ||||||||||||||||||||| || |||||||||||  | ||||| |  |    
T  29960721 agcaagatgaacacaaacggttttggatcaaatatcttgattcttgatggcaagaactgggaacgatggagcgctttgatgagatcattgtttggcgcgc 29960820  T
Q  245 aagatgtgagt 255  Q
    |||||||||||    
T  29960821 aagatgtgagt 29960831  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 296121 - 296231
Alignment:
Q  145 agcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaac 244  Q
    ||||||||||| |  || |||||||||||||| ||  || ||||||||| |||||||| ||||| ||||||||| |||||||||||  | ||||| |  |    
T  296121 agcaagatgaacacaaacggttttggatcaaatatcttgattcttgatggcaagaactaggaacaatggagtgctttgatgagatcattgtttggcgtgc 296220  T
Q  245 aagatgtgagt 255  Q
    |||||||||||    
T  296221 aagatgtgagt 296231  T

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Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 11186724 - 11186469
Alignment:
Q  13 atagaacacagtttctgctctaacaattggtacagagaacttgggttaaatcaa-agggaaatacgagtgaagtgtgaggggaatcattcttgggaaaca 111  Q
    |||||||||||||| || |||||||||||||| ||||| ||||||||||||| | || |||| |||||||||  ||||| ||||||||  |||| |||||    
T  11186724 atagaacacagtttttgttctaacaattggtatagagagcttgggttaaatccatagtgaaacacgagtgaaaagtgagcggaatcatcattggaaaaca 11186625  T
Q  112 ttgagtcaggtgtgagcattgatttctt------------gaaaaagcaagatgaatagcaatggttttggatcaaacattctggttcttgatgacaaga 199  Q
     ||||| | ||||| ||| | ||||||             ||| ||  |||||||| |  || |||||||||||||||||| || ||||| ||| |||||    
T  11186624 ctgagtgaagtgtgtgcactaatttctctggtttcttgaagaataatgaagatgaacaataacggttttggatcaaacattttgattcttaatggcaaga 11186525  T
Q  200 actgggaacgatggagtgccttgatgagatctctatttggagaacaagatgtgagt 255  Q
    |||||||| ||||||||||||||||||||||  | ||||| | |||||||||||||    
T  11186524 actgggaatgatggagtgccttgatgagatccttgtttggcgcacaagatgtgagt 11186469  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 11749374 - 11749285
Alignment:
Q  162 tggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttggagaacaagatgt 251  Q
    ||||||||||||||| || ||||| |||||||  |||||||||||| | |||||||| |||||||  ||  | ||||||| |||||||||    
T  11749374 tggttttggatcaaatatactggtacttgatggaaagaactgggaaaggtggagtgcattgatgaagtcgttgtttggagcacaagatgt 11749285  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 21462375 - 21462451
Alignment:
Q  163 ggttttggatcaaacattctggttcttgatgacaagaactgggaacgatggagtgccttgatgagatctctatttgg 239  Q
    ||||||||  |||| || |||||||||||||  ||||| |||||| | |||||||| |||||||| || ||||||||    
T  21462375 ggttttggtacaaatatactggttcttgatgggaagaattgggaaaggtggagtgcattgatgaggtcactatttgg 21462451  T

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Target: scaffold0336 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 518
Target Start/End: Original strand, 41 - 155
Alignment:
Q  405 aagaagaaagattgtaaggcactgttttacattcaacaaaatgttaataatcaacattttgagaagatttcacaggcaacaagatccaaagaaa-cttgg 503  Q
    |||||||||||||| || || || || |||||||||||||||||| ||||||| |||||||||||||| ||  |||| ||| |||||||||||| | |||    
T  41 aagaagaaagattgcaaagctcttttctacattcaacaaaatgttgataatcagcattttgagaagatatccaaggcgacaggatccaaagaaagcatgg 140  T
Q  504 gatatactagagaat 518  Q
    ||||| || ||||||    
T  141 gatattctggagaat 155  T

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