View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13143_low_7 (Length: 251)
Name: NF13143_low_7
Description: NF13143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13143_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 32252972 - 32253122
Alignment:
| Q |
19 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctgcatagtacatgttattgattagttcattaaatttca |
118 |
Q |
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| T |
32252972 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctgcatagtacatgttattgattagttcattaaatttca |
32253071 |
T |
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| Q |
119 |
ttaatttgacttatcacatcatagaaatgtacacattggttaaatatttag |
169 |
Q |
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| T |
32253072 |
ttaatttaacttatcacatcatagaaatgtacacattggttaaataattag |
32253122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 32242392 - 32242455
Alignment:
| Q |
19 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctg |
82 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32242392 |
ctctaatcacgtacaaaaggctgttggcgttgatgttccagtgtggagcatatatgccattctg |
32242455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 32248222 - 32248285
Alignment:
| Q |
19 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctg |
82 |
Q |
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| T |
32248222 |
ctctaatcacgtacaaaaggctgttggcgttgatgttccagtgtggagcatatatgccattctg |
32248285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 32256650 - 32256565
Alignment:
| Q |
160 |
aaatatttagctttttcgtttgttctccannnnnnnnnaaaa-tacatgggatattttaaacctcttccttcccatacctatgctt |
244 |
Q |
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| T |
32256650 |
aaatatttagctttttcgtttgttctccatttttttttaaaaatacatgggatattttagacctcttccttcccatacctatgctt |
32256565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 30605384 - 30605327
Alignment:
| Q |
28 |
cgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctgcat |
85 |
Q |
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|||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||| |
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| T |
30605384 |
cgtacattaggctgttggcgttcacggtccagtgtggagcatatataccattctgcat |
30605327 |
T |
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