View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13144_high_1 (Length: 743)

Name: NF13144_high_1
Description: NF13144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13144_high_1
NF13144_high_1
[»] chr3 (19 HSPs)
chr3 (21-273)||(23360265-23360519)
chr3 (25-273)||(23714008-23714258)
chr3 (25-273)||(23732464-23732714)
chr3 (25-273)||(23750919-23751169)
chr3 (25-273)||(23695568-23695823)
chr3 (25-217)||(23365090-23365283)
chr3 (74-259)||(24101105-24101293)
chr3 (64-273)||(24105244-24105456)
chr3 (268-357)||(23698169-23698258)
chr3 (268-357)||(23716624-23716713)
chr3 (268-357)||(23735080-23735169)
chr3 (268-357)||(23754744-23754833)
chr3 (639-719)||(23769731-23769811)
chr3 (639-726)||(23698599-23698686)
chr3 (639-726)||(23717054-23717141)
chr3 (639-726)||(23735510-23735597)
chr3 (639-699)||(23701321-23701381)
chr3 (639-699)||(23719776-23719836)
chr3 (639-699)||(23738232-23738292)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 23360265 - 23360519
Alignment:
Q  21 ttatacacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  23360265 ttatacacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggagtgactctcatccaatatatacaaactcaaagtgttcttgcatcaatt 23360364  T
Q  121 tatcctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaatg 219  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  23360365 tatcctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaaag 23360464  T
Q  220 tcatagatacttcaaat-aaaaaataaagcatatatcacaatgcaatggactttt 273  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  23360465 tcatagatacttcaaataaaaaaataaatcatatatcacaatgcaatggactttt 23360519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 23714008 - 23714258
Alignment:
Q  25 acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc 124  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23714008 acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc 23714107  T
Q  125 ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaatgtcat 223  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  23714108 ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaaagtcat 23714207  T
Q  224 agatacttcaaat-aaaaaataaagcatatatcacaatgcaatggactttt 273  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  23714208 agatacttcaaataaaaaaataaatcatatatcacaatgcaatggactttt 23714258  T

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Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 23732464 - 23732714
Alignment:
Q  25 acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc 124  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23732464 acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc 23732563  T
Q  125 ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaatgtcat 223  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  23732564 ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaaagtcat 23732663  T
Q  224 agatacttcaaat-aaaaaataaagcatatatcacaatgcaatggactttt 273  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  23732664 agatacttcaaataaaaaaataaatcatatatcacaatgcaatggactttt 23732714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 23750919 - 23751169
Alignment:
Q  25 acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc 124  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23750919 acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc 23751018  T
Q  125 ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaatgtcat 223  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  23751019 ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaaagtcat 23751118  T
Q  224 agatacttcaaat-aaaaaataaagcatatatcacaatgcaatggactttt 273  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  23751119 agatacttcaaataaaaaaataaatcatatatcacaatgcaatggactttt 23751169  T

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Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 23695568 - 23695823
Alignment:
Q  25 acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc 124  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23695568 acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc 23695667  T
Q  125 ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttc-----aat 218  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     ||     
T  23695668 ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaaattaaa 23695767  T
Q  219 gtcatagatacttcaaat-aaaaaataaagcatatatcacaatgcaatggactttt 273  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  23695768 gtcatagatacttcaaataaaaaaataaatcatatatcacaatgcaatggactttt 23695823  T

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Target: chr3; HSP #6
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 23365090 - 23365283
Alignment:
Q  25 acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc 124  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23365090 acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc 23365189  T
Q  125 ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaa 217  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23365190 ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaa 23365283  T

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Target: chr3; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 24101293 - 24101105
Alignment:
Q  74 tgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatcctatgt--gcacaacattttatttatcattaaatataacatgaaagttt 171  Q
    ||||||||||||| || || ||| ||||||||  ||||||||||||||||| ||| |  ||||||||||||||||||||  |||| ||||||| || |||    
T  24101293 tgactctcatccagtaaatgcaagctcaaagt--tcttgcatcaatttatcatatatatgcacaacattttatttatcaagaaatctaacatgtaatttt 24101196  T
Q  172 aagaacttttg-ttaccttgaattcttacaccactggctagcttcaatgtcatagatacttcaaataaaa--aataaagcatatatcacaa 259  Q
    ||||||||||  |||||||||||||| || ||||||||||||||||| ||| ||||| ||||| ||||||  |||||| || |||||||||    
T  24101195 aagaactttttattaccttgaattctcactccactggctagcttcaaagtcctagatgcttcacataaaaataataaatcacatatcacaa 24101105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 64 - 273
Target Start/End: Complemental strand, 24105456 - 24105244
Alignment:
Q  64 caaataggaatgactctcatccattatatacaatctcaaagtgtt-cttgcatcaatttatcctatgtgcacaacattttatttatcattaaatataaca 162  Q
    |||| ||||||||||||||||||| ||||  ||||| ||| |||| ||| |||||||| |||| | ||||||||||||||||| |||   |||| |||||    
T  24105456 caaacaggaatgactctcatccatcatatgaaatct-aaactgtttctttcatcaattcatccaacgtgcacaacattttatt-atcgagaaatgtaaca 24105359  T
Q  163 tgaaagtttaagaacttttg-ttaccttgaattcttacaccactggctagcttcaatgtcatagatacttcaaataaaaaat---aaagcatatatcaca 258  Q
    ||||||||||  |||||||  ||||||||||||||||| | | ||| || |||||| ||| ||||| ||||| |||||||||   ||| |||||||||||    
T  24105358 tgaaagtttagaaactttttattaccttgaattcttactctattgggtaacttcaaagtcctagatgcttcacataaaaaataacaaatcatatatcaca 24105259  T
Q  259 atgcaatggactttt 273  Q
    ||  |||||||||||    
T  24105258 atagaatggactttt 24105244  T

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Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 23698169 - 23698258
Alignment:
Q  268 acttttgaccaaggagttcttctgaaccatcgcgagtaaaattgcaatttcgatcaatggagtgttgggttagatcactaataccataaa 357  Q
    ||||||||||| ||| ||||||||||||||| |  ||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  23698169 acttttgaccagggaattcttctgaaccatctcttgtagaattgtaatttcgatcaatggagtgttcggttagatcacaaataccataaa 23698258  T

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Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 23716624 - 23716713
Alignment:
Q  268 acttttgaccaaggagttcttctgaaccatcgcgagtaaaattgcaatttcgatcaatggagtgttgggttagatcactaataccataaa 357  Q
    ||||||||||| ||| ||||||||||||||| |  ||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  23716624 acttttgaccagggaattcttctgaaccatctcttgtagaattgtaatttcgatcaatggagtgttcggttagatcacaaataccataaa 23716713  T

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Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 23735080 - 23735169
Alignment:
Q  268 acttttgaccaaggagttcttctgaaccatcgcgagtaaaattgcaatttcgatcaatggagtgttgggttagatcactaataccataaa 357  Q
    ||||||||||| ||| ||||||||||||||| |  ||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  23735080 acttttgaccagggaattcttctgaaccatctcttgtagaattgtaatttcgatcaatggagtgttcggttagatcacaaataccataaa 23735169  T

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Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 23754744 - 23754833
Alignment:
Q  268 acttttgaccaaggagttcttctgaaccatcgcgagtaaaattgcaatttcgatcaatggagtgttgggttagatcactaataccataaa 357  Q
    ||||||||||| ||| ||||||||||||||| |  ||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  23754744 acttttgaccagggaattcttctgaaccatctcttgtagaattgtaatttcgatcaatggagtgttcggttagatcacaaataccataaa 23754833  T

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Target: chr3; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 639 - 719
Target Start/End: Original strand, 23769731 - 23769811
Alignment:
Q  639 ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggagaaatatgaagaagagagaggg 719  Q
    |||||||||||||||||||| || |||||||||||||||||  ||||||||||| |||||||||| |||||||||| ||||    
T  23769731 ttgtgacaacaaatatttgaagatccaataaatttctttaaatagagaaatacagtggagaaatacgaagaagagaaaggg 23769811  T

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Target: chr3; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 639 - 726
Target Start/End: Original strand, 23698599 - 23698686
Alignment:
Q  639 ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggagaaatatgaagaagagagagggatctcat 726  Q
    |||||||||||||||||| |||| ||||||| |||||||||| ||||||||||| | |||||||| |||||||||| ||||| |||||    
T  23698599 ttgtgacaacaaatattttatgatccaataattttctttaatcagagaaatacagtagagaaatacgaagaagagaaagggaactcat 23698686  T

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Target: chr3; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 639 - 726
Target Start/End: Original strand, 23717054 - 23717141
Alignment:
Q  639 ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggagaaatatgaagaagagagagggatctcat 726  Q
    |||||||||||||||||| |||| ||||||| |||||||||| ||||||||||| | |||||||| |||||||||| ||||| |||||    
T  23717054 ttgtgacaacaaatattttatgatccaataattttctttaatcagagaaatacagtagagaaatacgaagaagagaaagggaactcat 23717141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 639 - 726
Target Start/End: Original strand, 23735510 - 23735597
Alignment:
Q  639 ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggagaaatatgaagaagagagagggatctcat 726  Q
    |||||||||||||||||| |||| ||||||| |||||||||| ||||||||||| | |||||||| |||||||||| ||||| |||||    
T  23735510 ttgtgacaacaaatattttatgatccaataattttctttaatcagagaaatacagtagagaaatacgaagaagagaaagggaactcat 23735597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Original strand, 23701321 - 23701381
Alignment:
Q  639 ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggaga 699  Q
    |||||||||||||||||||| ||  ||||||||||||||||| ||||||||||| ||||||    
T  23701321 ttgtgacaacaaatatttgaagattcaataaatttctttaatcagagaaatacactggaga 23701381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Original strand, 23719776 - 23719836
Alignment:
Q  639 ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggaga 699  Q
    |||||||||||||||||||| ||  ||||||||||||||||| ||||||||||| ||||||    
T  23719776 ttgtgacaacaaatatttgaagattcaataaatttctttaatcagagaaatacactggaga 23719836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Original strand, 23738232 - 23738292
Alignment:
Q  639 ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggaga 699  Q
    |||||||||||||||||||| ||  ||||||||||||||||| ||||||||||| ||||||    
T  23738232 ttgtgacaacaaatatttgaagattcaataaatttctttaatcagagaaatacactggaga 23738292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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