View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13144_low_1 (Length: 743)
Name: NF13144_low_1
Description: NF13144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13144_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 23360265 - 23360519
Alignment:
| Q |
21 |
ttatacacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
23360265 |
ttatacacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggagtgactctcatccaatatatacaaactcaaagtgttcttgcatcaatt |
23360364 |
T |
|
| Q |
121 |
tatcctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaatg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
23360365 |
tatcctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaaag |
23360464 |
T |
|
| Q |
220 |
tcatagatacttcaaat-aaaaaataaagcatatatcacaatgcaatggactttt |
273 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23360465 |
tcatagatacttcaaataaaaaaataaatcatatatcacaatgcaatggactttt |
23360519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 23714008 - 23714258
Alignment:
| Q |
25 |
acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
124 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23714008 |
acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
23714107 |
T |
|
| Q |
125 |
ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaatgtcat |
223 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
23714108 |
ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaaagtcat |
23714207 |
T |
|
| Q |
224 |
agatacttcaaat-aaaaaataaagcatatatcacaatgcaatggactttt |
273 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23714208 |
agatacttcaaataaaaaaataaatcatatatcacaatgcaatggactttt |
23714258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 23732464 - 23732714
Alignment:
| Q |
25 |
acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
124 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23732464 |
acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
23732563 |
T |
|
| Q |
125 |
ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaatgtcat |
223 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23732564 |
ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaaagtcat |
23732663 |
T |
|
| Q |
224 |
agatacttcaaat-aaaaaataaagcatatatcacaatgcaatggactttt |
273 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23732664 |
agatacttcaaataaaaaaataaatcatatatcacaatgcaatggactttt |
23732714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 23750919 - 23751169
Alignment:
| Q |
25 |
acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
124 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23750919 |
acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
23751018 |
T |
|
| Q |
125 |
ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaatgtcat |
223 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23751019 |
ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaaagtcat |
23751118 |
T |
|
| Q |
224 |
agatacttcaaat-aaaaaataaagcatatatcacaatgcaatggactttt |
273 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23751119 |
agatacttcaaataaaaaaataaatcatatatcacaatgcaatggactttt |
23751169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 23695568 - 23695823
Alignment:
| Q |
25 |
acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
124 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23695568 |
acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
23695667 |
T |
|
| Q |
125 |
ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttc-----aat |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23695668 |
ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaaattaaa |
23695767 |
T |
|
| Q |
219 |
gtcatagatacttcaaat-aaaaaataaagcatatatcacaatgcaatggactttt |
273 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23695768 |
gtcatagatacttcaaataaaaaaataaatcatatatcacaatgcaatggactttt |
23695823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 23365090 - 23365283
Alignment:
| Q |
25 |
acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
124 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23365090 |
acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
23365189 |
T |
|
| Q |
125 |
ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23365190 |
ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaa |
23365283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 24101293 - 24101105
Alignment:
| Q |
74 |
tgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatcctatgt--gcacaacattttatttatcattaaatataacatgaaagttt |
171 |
Q |
| |
|
||||||||||||| || || ||| |||||||| ||||||||||||||||| ||| | |||||||||||||||||||| |||| ||||||| || ||| |
|
|
| T |
24101293 |
tgactctcatccagtaaatgcaagctcaaagt--tcttgcatcaatttatcatatatatgcacaacattttatttatcaagaaatctaacatgtaatttt |
24101196 |
T |
|
| Q |
172 |
aagaacttttg-ttaccttgaattcttacaccactggctagcttcaatgtcatagatacttcaaataaaa--aataaagcatatatcacaa |
259 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||||||||||||| ||| ||||| ||||| |||||| |||||| || ||||||||| |
|
|
| T |
24101195 |
aagaactttttattaccttgaattctcactccactggctagcttcaaagtcctagatgcttcacataaaaataataaatcacatatcacaa |
24101105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 64 - 273
Target Start/End: Complemental strand, 24105456 - 24105244
Alignment:
| Q |
64 |
caaataggaatgactctcatccattatatacaatctcaaagtgtt-cttgcatcaatttatcctatgtgcacaacattttatttatcattaaatataaca |
162 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||| ||| |||| ||| |||||||| |||| | ||||||||||||||||| ||| |||| ||||| |
|
|
| T |
24105456 |
caaacaggaatgactctcatccatcatatgaaatct-aaactgtttctttcatcaattcatccaacgtgcacaacattttatt-atcgagaaatgtaaca |
24105359 |
T |
|
| Q |
163 |
tgaaagtttaagaacttttg-ttaccttgaattcttacaccactggctagcttcaatgtcatagatacttcaaataaaaaat---aaagcatatatcaca |
258 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| | | ||| || |||||| ||| ||||| ||||| ||||||||| ||| ||||||||||| |
|
|
| T |
24105358 |
tgaaagtttagaaactttttattaccttgaattcttactctattgggtaacttcaaagtcctagatgcttcacataaaaaataacaaatcatatatcaca |
24105259 |
T |
|
| Q |
259 |
atgcaatggactttt |
273 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
24105258 |
atagaatggactttt |
24105244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 23698169 - 23698258
Alignment:
| Q |
268 |
acttttgaccaaggagttcttctgaaccatcgcgagtaaaattgcaatttcgatcaatggagtgttgggttagatcactaataccataaa |
357 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| | ||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
23698169 |
acttttgaccagggaattcttctgaaccatctcttgtagaattgtaatttcgatcaatggagtgttcggttagatcacaaataccataaa |
23698258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 23716624 - 23716713
Alignment:
| Q |
268 |
acttttgaccaaggagttcttctgaaccatcgcgagtaaaattgcaatttcgatcaatggagtgttgggttagatcactaataccataaa |
357 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| | ||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
23716624 |
acttttgaccagggaattcttctgaaccatctcttgtagaattgtaatttcgatcaatggagtgttcggttagatcacaaataccataaa |
23716713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 23735080 - 23735169
Alignment:
| Q |
268 |
acttttgaccaaggagttcttctgaaccatcgcgagtaaaattgcaatttcgatcaatggagtgttgggttagatcactaataccataaa |
357 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| | ||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
23735080 |
acttttgaccagggaattcttctgaaccatctcttgtagaattgtaatttcgatcaatggagtgttcggttagatcacaaataccataaa |
23735169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 23754744 - 23754833
Alignment:
| Q |
268 |
acttttgaccaaggagttcttctgaaccatcgcgagtaaaattgcaatttcgatcaatggagtgttgggttagatcactaataccataaa |
357 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| | ||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
23754744 |
acttttgaccagggaattcttctgaaccatctcttgtagaattgtaatttcgatcaatggagtgttcggttagatcacaaataccataaa |
23754833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 639 - 719
Target Start/End: Original strand, 23769731 - 23769811
Alignment:
| Q |
639 |
ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggagaaatatgaagaagagagaggg |
719 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||| |||||||||| |||| |
|
|
| T |
23769731 |
ttgtgacaacaaatatttgaagatccaataaatttctttaaatagagaaatacagtggagaaatacgaagaagagaaaggg |
23769811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 639 - 726
Target Start/End: Original strand, 23698599 - 23698686
Alignment:
| Q |
639 |
ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggagaaatatgaagaagagagagggatctcat |
726 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||||| ||||||||||| | |||||||| |||||||||| ||||| ||||| |
|
|
| T |
23698599 |
ttgtgacaacaaatattttatgatccaataattttctttaatcagagaaatacagtagagaaatacgaagaagagaaagggaactcat |
23698686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 639 - 726
Target Start/End: Original strand, 23717054 - 23717141
Alignment:
| Q |
639 |
ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggagaaatatgaagaagagagagggatctcat |
726 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||||| ||||||||||| | |||||||| |||||||||| ||||| ||||| |
|
|
| T |
23717054 |
ttgtgacaacaaatattttatgatccaataattttctttaatcagagaaatacagtagagaaatacgaagaagagaaagggaactcat |
23717141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 639 - 726
Target Start/End: Original strand, 23735510 - 23735597
Alignment:
| Q |
639 |
ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggagaaatatgaagaagagagagggatctcat |
726 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||||| ||||||||||| | |||||||| |||||||||| ||||| ||||| |
|
|
| T |
23735510 |
ttgtgacaacaaatattttatgatccaataattttctttaatcagagaaatacagtagagaaatacgaagaagagaaagggaactcat |
23735597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Original strand, 23701321 - 23701381
Alignment:
| Q |
639 |
ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggaga |
699 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
23701321 |
ttgtgacaacaaatatttgaagattcaataaatttctttaatcagagaaatacactggaga |
23701381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Original strand, 23719776 - 23719836
Alignment:
| Q |
639 |
ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggaga |
699 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
23719776 |
ttgtgacaacaaatatttgaagattcaataaatttctttaatcagagaaatacactggaga |
23719836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 699
Target Start/End: Original strand, 23738232 - 23738292
Alignment:
| Q |
639 |
ttgtgacaacaaatatttgatgacccaataaatttctttaataagagaaatacattggaga |
699 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
23738232 |
ttgtgacaacaaatatttgaagattcaataaatttctttaatcagagaaatacactggaga |
23738292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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