View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13144_low_2 (Length: 618)

Name: NF13144_low_2
Description: NF13144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13144_low_2
NF13144_low_2
[»] chr6 (12 HSPs)
chr6 (13-600)||(7806359-7806946)
chr6 (25-170)||(10415842-10415987)
chr6 (28-208)||(3255441-3255621)
chr6 (423-553)||(10415648-10415778)
chr6 (415-545)||(7813983-7814113)
chr6 (419-540)||(15398188-15398309)
chr6 (419-540)||(15409975-15410096)
chr6 (417-537)||(7871216-7871336)
chr6 (27-200)||(7814380-7814553)
chr6 (476-547)||(3255928-3255999)
chr6 (117-210)||(7871599-7871692)
chr6 (28-150)||(7860354-7860476)
[»] chr7 (3 HSPs)
chr7 (24-259)||(19317226-19317461)
chr7 (419-540)||(19317660-19317781)
chr7 (350-398)||(19317552-19317600)
[»] chr4 (1 HSPs)
chr4 (35-225)||(14017997-14018187)
[»] chr1 (2 HSPs)
chr1 (28-209)||(37997164-37997345)
chr1 (421-570)||(37997596-37997745)
[»] scaffold0014 (1 HSPs)
scaffold0014 (70-185)||(166485-166598)
[»] chr5 (1 HSPs)
chr5 (31-139)||(24112215-24112323)


Alignment Details
Target: chr6 (Bit Score: 522; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 13 - 600
Target Start/End: Original strand, 7806359 - 7806946
Alignment:
13 aaaatagataagttcagcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7806359 aaaatagataagttcagcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagattt 7806458  T
113 agggttttgagtgatggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaataacat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
7806459 agggttttgagtgatggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagagtttgcgagacgaaaataacat 7806558  T
213 gctttaaggtgtggaaaggcaaagtgagatgaatttcctctatatgaggnnnnnnngcctcttggagccaatttgtcacgttaaatctactattttctgg 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
7806559 gctttaaggtgtggaaaggcaaagtgagatgaatttcctctatatgaggtttttttgcctcttggagccaatttgtcacgttaaatctactattttctgg 7806658  T
313 gtggtatctaaagtcatacttgagggaaannnnnnngatgggttggttggttgaaagaggagagatgatgacattattgacaaaactccggaagctctca 412  Q
    |||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
7806659 gtggtatctaaagtcatacttgagggaaatttttttgatgggtttgttggttgaaagaggagagaggatgacattattgacaaaactccggaagctctca 7806758  T
413 acagcagggagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagta 512  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7806759 acaacagggagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagta 7806858  T
513 actcatctggtaaatcactgattctatcgaccaaatcgttttcacaattgtagagtgcctcctgtgagtaacaattaacctgaaccgt 600  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
7806859 actcatctggtaaatcacttattctatcgaccaaatcgttttcacaattgtagagtgcctcctgggagtaacaattaacctgaaccgt 7806946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 10415987 - 10415842
Alignment:
25 ttcagcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagt 124  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| |||   ||||||||||||||    
10415987 ttcagcatgcaaatcttctaggataggacaagcatgaagaaaatttatgtaatcattccgattttcaaaagaaactgatatcaagcttagggttttgagt 10415888  T
125 gatggaagatgaacacttgaagtatcctttccaacatataaacttt 170  Q
    ||  |||||||||||| ||||||||||||||||||||||| |||||    
10415887 gacagaagatgaacacatgaagtatcctttccaacatatacacttt 10415842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 3255441 - 3255621
Alignment:
28 agcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgat 127  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||| ||||  ||  || | |||||||||| ||||||    
3255441 agcatgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtgat 3255540  T
128 ggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaata 208  Q
    ||||||| |||||  ||||| |||  |||||||| ||| |||| ||||||||||||||||||||||||  ||| |||||||    
3255541 ggaagatcaacacaagaagtgtccgctccaacatttaacctttcaagtttgagaacaacaagggtttggaagatgaaaata 3255621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 423 - 553
Target Start/End: Complemental strand, 10415778 - 10415648
Alignment:
423 gtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagtaactcatctgg 522  Q
    |||||||||| |||| |||||||||||| |||||||||| | ||||||| | |||||||| | || |||| |||||||||||||||| |||||||||||     
10415778 gtgaatagcaaagtggggtccaccgcttcgaaagaatggccatagtaaatgtcagtttggctgggggaaacgagagaatgtaaagcaataactcatctga 10415679  T
523 taaatcactgattctatcgaccaaatcgttt 553  Q
    |||||| |||||||| || ||||||| ||||    
10415678 taaatcgctgattctgtcaaccaaattgttt 10415648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 415 - 545
Target Start/End: Complemental strand, 7814113 - 7813983
Alignment:
415 agcagggagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagtaac 514  Q
    |||||||||||||||||||||| ||||||| ||||||||||| | ||  ||||  ||||| ||||| ||| |||||||||||||||||| |  || ||||    
7814113 agcagggagtgaatagcagagtccggtccatcgcttggaaagtacggttgtagagaaagcgagtttagttgggagaaaagagagaatgtgagacaataac 7814014  T
515 tcatctggtaaatcactgattctatcgacca 545  Q
    ||||| |||||||| ||||||||||| ||||    
7814013 tcatccggtaaatcgctgattctatccacca 7813983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 419 - 540
Target Start/End: Complemental strand, 15398309 - 15398188
Alignment:
419 gggagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagtaactcat 518  Q
    |||||||||||| |||||| |||||||||||| ||||||| ||  ||||||||||| | ||| ||| ||||||||||||| |||| |  || ||||||||    
15398309 gggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaattttgttgggagaaaagagagtatgtgacacaataactcat 15398210  T
519 ctggtaaatcactgattctatc 540  Q
    |||||||  | |||||||||||    
15398209 ctggtaatccgctgattctatc 15398188  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 419 - 540
Target Start/End: Complemental strand, 15410096 - 15409975
Alignment:
419 gggagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagtaactcat 518  Q
    |||||||||||| |||||| |||||||||||| ||||||| ||  ||||||||||| | ||| ||| ||||||||||||| |||| |  || ||||||||    
15410096 gggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaattttgttgggagaaaagagagtatgtgacacaataactcat 15409997  T
519 ctggtaaatcactgattctatc 540  Q
    |||||||  | |||||||||||    
15409996 ctggtaatccgctgattctatc 15409975  T

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Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 417 - 537
Target Start/End: Complemental strand, 7871336 - 7871216
Alignment:
417 cagggagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagtaactc 516  Q
    |||||||||||||||| |||| | ||||||| |||||||||| ||  ||||| ||||| ||||||||| |||| |||||||||||||||  ||  |||||    
7871336 cagggagtgaatagcatagtgggatccaccgtttggaaagaagggttgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaacaactc 7871237  T
517 atctggtaaatcactgattct 537  Q
    ||| ||||||  |||||||||    
7871236 atcaggtaaactactgattct 7871216  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 7814553 - 7814380
Alignment:
27 cagcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtga 126  Q
    |||||||||||||||||||| | |||||||||   ||||||  ||||||||||| | ||||||||||| ||||  |  | | ||  ||| ||||||| ||    
7814553 cagcatgcaaatcttctaggttgggacaagcagaaagaaaacctatgtaatcattctgattttcaaaataaacataacttaaatgcaggattttgagcga 7814454  T
127 tggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgaga 200  Q
     ||||||| |||||  |||||||| |||||||  | ||||     |||||||||||||||||||||||| ||||    
7814453 gggaagatcaacacaagaagtatcatttccaatgtgtaaatccataagtttgagaacaacaagggtttgagaga 7814380  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 547
Target Start/End: Original strand, 3255928 - 3255999
Alignment:
476 agtttggtttggagaaaagagagaatgtaaagcagtaactcatctggtaaatcactgattctatcgaccaaa 547  Q
    ||||| ||| |||||||| | |||||||   ||| ||||||||| |||||||||||||||||||||||||||    
3255928 agttttgttgggagaaaacaaagaatgtgttgcaataactcatccggtaaatcactgattctatcgaccaaa 3255999  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 7871692 - 7871599
Alignment:
117 ttttgagtgatggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaataac 210  Q
    |||||||  ||||||||||||||| |||||||||  ||  || || ||  || | |||||||||||||||||||||||| |||| |||||||||    
7871692 ttttgagcaatggaagatgaacacatgaagtatcaattgaaaaatctatcctcttaagtttgagaacaacaagggtttgagagatgaaaataac 7871599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 7860476 - 7860354
Alignment:
28 agcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgat 127  Q
    |||||| |||||||| || ||||||||||||   |||||||| |||||||||| |||||||  ||||  ||| ||| ||| ||  |  |||||||| |||    
7860476 agcatgtaaatcttccagaataggacaagcagaaagaaaattgatgtaatcattccgatttgtaaaatgaacggatttcaaatgcaatgttttgagcgat 7860377  T
128 ggaagatgaacacttgaagtatc 150  Q
    ||||||| |||||  ||||||||    
7860376 ggaagatcaacacacgaagtatc 7860354  T

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Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 19317226 - 19317461
Alignment:
24 gttcagcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgag 123  Q
    |||| |||| ||||||||||| ||||||||||||||  |||||||||| ||||| || || ||||| |||| ||||||||||||||||||||||||| ||    
19317226 gttctgcatacaaatcttctaagataggacaagcataaagaaaatttacgtaattattccaattttgaaaataaactgatgtcagatttagggttttaag 19317325  T
124 tgatggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaataacatgctttaaggtg 223  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||| | |  || | |||||     
19317326 tgatggaagatgaacacacgaagtaccctttccaacatataaactttcaagttttagaacaacaagggtttgagagacaaaaagatcgggcatcaaggta 19317425  T
224 tggaaaggcaaagtgagatgaatttcctctatatga 259  Q
    ||| |||||||| ||||||||||||| |||||||||    
19317426 tgggaaggcaaactgagatgaatttcttctatatga 19317461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 419 - 540
Target Start/End: Original strand, 19317660 - 19317781
Alignment:
419 gggagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagtaactcat 518  Q
    ||||||||||||||||||  |||||| ||||||||||||||||  ||||||||||| ||||| ||| ||||||||||||||||||||| || ||||||||    
19317660 gggagtgaatagcagagttgggtccaacgcttggaaagaatggctgtagtaaaagctagttttgttgggagaaaagagagaatgtaaatcaataactcat 19317759  T
519 ctggtaaatcactgattctatc 540  Q
    |||||||||| || ||||||||    
19317760 ctggtaaatcgcttattctatc 19317781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 19317552 - 19317600
Alignment:
350 atgggttggttggttgaaagaggagagatgatgacattattgacaaaac 398  Q
    ||||||| ||||||||||| ||||||||  |||| ||||||||||||||    
19317552 atgggtttgttggttgaaacaggagagagcatgatattattgacaaaac 19317600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 14018187 - 14017997
Alignment:
35 aaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgatggaagat 134  Q
    ||||||||||||||||||||| |||  ||||||||||| ||||||| || |||||||||||||||  ||  || ||| |||||||||||||| |||||||    
14018187 aaatcttctaggataggacaaccataaagaaaatttatataatcattccaattttcaaaagaaacatattccaaattcagggttttgagtgacggaagat 14018088  T
135 gaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaataacatgctttaaggtgtg 225  Q
     |||||  |||||||||||| ||| || ||| | |||||||||||||||||||| |||||| || | ||||| |||  |||| ||||||||    
14018087 caacacacgaagtatccttttcaatatctaaccgttgaagtttgagaacaacaaaggtttgggatatgaaaacaacgggcttcaaggtgtg 14017997  T

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Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 37997164 - 37997345
Alignment:
28 agcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgat 127  Q
    |||||| |||||||| ||||||||||||||    |||||||| |||||||| | | |||||| |||| | ||| ||  || ||  |||||||| || |||    
37997164 agcatgaaaatcttcaaggataggacaagcggaaagaaaattaatgtaatccttctgatttttaaaatacactaattgcaaataaagggttttcagcgat 37997263  T
128 ggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaataa 209  Q
    ||||||| |||||   ||||||| |||||||||| ||| |||| |||||||||||||||||||||||| |||| ||||||||    
37997264 ggaagatcaacacacaaagtatcatttccaacatttaaccttttaagtttgagaacaacaagggtttgggagatgaaaataa 37997345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 421 - 570
Target Start/End: Original strand, 37997596 - 37997745
Alignment:
421 gagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagtaactcatct 520  Q
    ||||||| ||||||||  |||||||||||| |||||||  |  ||||||||||| |||||  || | ||||||||||| ||||||  || ||||||||||    
37997596 gagtgaacagcagagtagggtccaccgctttgaaagaacagttgtagtaaaagcgagtttcattggtagaaaagagagtatgtaacacaataactcatct 37997695  T
521 ggtaaatcactgattctatcgaccaaatcgttttcacaattgtagagtgc 570  Q
    |||||||| |||||||||||| |||||| |||  ||| ||||||||||||    
37997696 ggtaaatcgctgattctatcgtccaaattgttgccaccattgtagagtgc 37997745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 166485 - 166598
Alignment:
70 tatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgatggaagatgaacacttgaagtatcctttccaacatataaactt 169  Q
    ||||||||||| | || ||| |||| |||||||||| | || || ||||  |||||||||||||| |||||   ||||||| || |||||||||||| ||    
166485 tatgtaatcattctgactttaaaaataaactgatgttaaatgtaaggtt--gagtgatggaagattaacacacaaagtatcattaccaacatataaattt 166582  T
170 tgaagtttgagaacaa 185  Q
    | ||||||||||||||    
166583 tcaagtttgagaacaa 166598  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 24112323 - 24112215
Alignment:
31 atgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgatgga 130  Q
    ||||||||||| ||| |||||||||||||| ||||  || ||| |||||| | |||||||| || ||||  || ||| |  |||| ||||||| ||||||    
24112323 atgcaaatcttgtagaataggacaagcattaagaagcttaatgaaatcattctgattttcacaacaaacatatttcaaacctaggattttgagagatgga 24112224  T
131 agatgaaca 139  Q
    |||| ||||    
24112223 agatcaaca 24112215  T

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