View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13144_low_3 (Length: 607)
Name: NF13144_low_3
Description: NF13144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13144_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 10201839 - 10202431
Alignment:
| Q |
1 |
ctgtcggtgtaattatagaaagaggacttactacgtcatttggtttctcggaactaatagaatctgaaaccattcaaaatgttgcaacacnnnnnnnngg |
100 |
Q |
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| T |
10201839 |
ctgtcggtgtaattatagaaagaggacttactacatcatttggtttctcggaactaatagaatctgaaaccattcaaaatgttgcaacacttttttttgg |
10201938 |
T |
|
| Q |
101 |
agggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgtcctcgcattaacttgacaatcattagatttttgttgtcgtctaaatta |
200 |
Q |
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| T |
10201939 |
agggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgccctcgaattaacttgacaatcattagatttttgttgtcgtctaaatta |
10202038 |
T |
|
| Q |
201 |
gaaaatgaacaaattgataaaagtggagtacaatctaaggaaaaagagattttaatgtcgttgtctggggaagaaactgcgaacgatgagattgacaata |
300 |
Q |
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| T |
10202039 |
gaaaatgaacaaattgataaaagtggagtacaatctaaggaaaaagagattttaatgtcgttgtccggggaagagactgcgaatgatgagattgacaata |
10202138 |
T |
|
| Q |
301 |
acttcatggttgatttctataacaggcatgtcgcctcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttgaatgtttgaa |
400 |
Q |
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| T |
10202139 |
acttcatggttgatttttataacaggcatgtcgcttcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttgaatgtttgaa |
10202238 |
T |
|
| Q |
401 |
agagattggtgacatatactctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtccagaa |
500 |
Q |
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| T |
10202239 |
agagattggtgacatatactctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtccagaa |
10202338 |
T |
|
| Q |
501 |
cttggatcagttggtgatattttagcttcttcagattttgatattcatggctctgtgttggtcattcaacaacatagagatgtcaagaaaggt |
593 |
Q |
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| T |
10202339 |
cttggatcagttggtgatattttagcttcttcagattttgatattcatggttctgtgttggtcattcaacaacatagagatgtcaagaaaggt |
10202431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 99 - 589
Target Start/End: Original strand, 51741139 - 51741626
Alignment:
| Q |
99 |
ggagggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgtcctcgcattaacttgacaatcattagatttttgttgtc---gtcta |
195 |
Q |
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| T |
51741139 |
ggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcatcagattttttttgtcttcgtctt |
51741238 |
T |
|
| Q |
196 |
aattagaaaatgaacaaattgataaaagtggagtacaatctaaggaaaaagagattttaatgtcgttgtctggggaagaaactgcgaacgatgagattga |
295 |
Q |
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| T |
51741239 |
tgtcacataaagaacatattga---aagtggagtacaatatgatgaaaaagaaattttaatgtctttatcaggggaagagactgtgaa---tgagattga |
51741332 |
T |
|
| Q |
296 |
caataacttcatggttgatttctataacaggcatgtcgcctcgggaaaaattggatatgtagaaaattttgtgaagaatggaagacaaacagttgaatgt |
395 |
Q |
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| T |
51741333 |
caatacttttatggttgatttttataacaggtatgtggcttcaggacagattggatatgtggaaaagtttgtgaaagatggaacacaaacagtggaatct |
51741432 |
T |
|
| Q |
396 |
ttgaaagagattggtgacatatactctttgtttatagttggaaagggtggtagaggaaatagttcactaacaatagatatgagtgattgggaggaatgtc |
495 |
Q |
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|||||||||||||| ||| | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| |
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| T |
51741433 |
ttgaaagagattggggacttgtactctttgtttatagtaggaagaggtggtagaggaaatagttcattaacaataggtatgagtgattgggaagaatgtc |
51741532 |
T |
|
| Q |
496 |
cagaacttggatcagttggtgatattttagcttcttcagattttgatattcatggctctgtgttggtcattcaacaacatagagatgtcaagaa |
589 |
Q |
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||||||||||| | ||||||||| | || ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
51741533 |
cagaacttggaacggttggtgatgtcttggcttcttcagactttgatattcatggttctgttttggtcattcaacaacatagagatgttaagaa |
51741626 |
T |
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