View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13145_high_2 (Length: 588)

Name: NF13145_high_2
Description: NF13145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13145_high_2
NF13145_high_2
[»] chr8 (10 HSPs)
chr8 (103-524)||(1954124-1954541)
chr8 (104-234)||(2026891-2027022)
chr8 (64-110)||(1958286-1958332)
chr8 (514-588)||(6098598-6098672)
chr8 (514-588)||(27082918-27082992)
chr8 (514-588)||(11727060-11727134)
chr8 (514-588)||(13307659-13307733)
chr8 (519-588)||(5300026-5300095)
chr8 (519-588)||(34895008-34895077)
chr8 (543-588)||(41362580-41362625)
[»] chr4 (11 HSPs)
chr4 (514-588)||(25701157-25701231)
chr4 (20-61)||(52364427-52364468)
chr4 (20-63)||(42492718-42492761)
chr4 (514-588)||(37287771-37287845)
chr4 (514-588)||(49376004-49376078)
chr4 (514-587)||(27396653-27396726)
chr4 (519-588)||(46888257-46888326)
chr4 (512-588)||(39397953-39398029)
chr4 (541-588)||(4598056-4598103)
chr4 (519-588)||(34948197-34948266)
chr4 (547-588)||(37775739-37775780)
[»] chr5 (11 HSPs)
chr5 (514-587)||(11898039-11898112)
chr5 (20-63)||(6696822-6696865)
chr5 (20-63)||(9935417-9935460)
chr5 (514-588)||(5112377-5112451)
chr5 (498-588)||(25668671-25668760)
chr5 (514-588)||(40133422-40133496)
chr5 (514-588)||(7693267-7693341)
chr5 (514-588)||(31786710-31786784)
chr5 (519-588)||(699192-699261)
chr5 (519-588)||(23116286-23116355)
chr5 (519-588)||(35511541-35511610)
[»] chr1 (9 HSPs)
chr1 (20-63)||(39346022-39346065)
chr1 (514-588)||(16415678-16415753)
chr1 (498-588)||(32216072-32216162)
chr1 (543-588)||(21289734-21289779)
chr1 (514-588)||(3309181-3309254)
chr1 (514-588)||(38823247-38823321)
chr1 (514-588)||(47279222-47279296)
chr1 (519-588)||(34012446-34012515)
chr1 (519-588)||(48620675-48620744)
[»] chr7 (11 HSPs)
chr7 (514-588)||(10359289-10359363)
chr7 (512-588)||(26980333-26980409)
chr7 (27-63)||(9972950-9972986)
chr7 (519-588)||(5657556-5657625)
chr7 (514-587)||(12165764-12165837)
chr7 (518-583)||(34362228-34362293)
chr7 (517-586)||(41765155-41765224)
chr7 (514-588)||(4582931-4583005)
chr7 (519-587)||(6546536-6546604)
chr7 (519-587)||(8861302-8861370)
chr7 (512-588)||(21991646-21991722)
[»] chr2 (7 HSPs)
chr2 (514-588)||(19313889-19313963)
chr2 (514-588)||(4264169-4264243)
chr2 (514-587)||(13711501-13711574)
chr2 (519-588)||(33660460-33660529)
chr2 (514-588)||(41463942-41464016)
chr2 (514-588)||(43770931-43771005)
chr2 (543-588)||(4763697-4763742)
[»] chr6 (4 HSPs)
chr6 (519-588)||(15491657-15491726)
chr6 (514-588)||(3880012-3880086)
chr6 (514-588)||(6088945-6089019)
chr6 (514-588)||(18498470-18498545)
[»] chr3 (8 HSPs)
chr3 (519-588)||(2007966-2008035)
chr3 (543-588)||(37203124-37203169)
chr3 (517-588)||(32373503-32373572)
chr3 (545-588)||(3362312-3362355)
chr3 (541-587)||(11466879-11466925)
chr3 (514-588)||(22446139-22446212)
chr3 (514-588)||(25579767-25579841)
chr3 (519-588)||(4015493-4015562)
[»] scaffold0002 (1 HSPs)
scaffold0002 (519-587)||(94458-94526)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 103 - 524
Target Start/End: Complemental strand, 1954541 - 1954124
Alignment:
Q  103 taacaccactcttatttttgtggcatttatcttcaaaattttgtaaatttttatgggctattattaccttacatttt-ccctatcaatgaaagcctcaat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||    
T  1954541 taacaccactcttatttttgtggcatttatcttcaaaattttgtaaatttttatgggctattattacctaacatttttccctatcaatgaaagcctcgat 1954442  T
Q  202 tattttttcgacgtatgatatataatcctcaatgtatataaagtgtccaagtttgtatttgtattttgtgtattctttggtgttacatataacataatgg 301  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1954441 tatttttttgacgtatgatatacaatcctcaatgtatataaagtgtcaaagtttgtatttgtattttgtgtattctttggtgttacatataacataatgg 1954342  T
Q  302 agtgaatgtagaacatttgatagatatattatgagtagatcatcaatttgcccttcaaaattgtaggagtcgaacatttacaccctgaatattgtctata 401  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| | ||| |||||||||    
T  1954341 agtgaatgtagaacatttgatagatatattatgagtaaatcatcaatttgcccttcaaaattgtaggcgtcggacatttacaccttaaattttgtctata 1954242  T
Q  402 ggtaaaaaaggtcataattttgaataatattaggcaagactatcattttattcgttcacttcattagatggtgtgacttgcacgttaactgtttactttt 501  Q
    |||     || ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  1954241 ggt-----agatcataattttgaataatattaggcaagactatccttttattcgctcacttcattagatgatgtgacttgcacgttaactgtttactttt 1954147  T
Q  502 tagaaaattctatggtaaagtta 524  Q
    | |||||||||||||| ||||||    
T  1954146 tggaaaattctatggtgaagtta 1954124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 104 - 234
Target Start/End: Original strand, 2026891 - 2027022
Alignment:
Q  104 aacaccactcttatttttgtggcatttatcttcaaaattttgtaaatttttatgggctattattaccttacattttccctatcaatgaaagcctcaatta 203  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||| || ||||||||||||||||||    
T  2026891 aacaccactcttatttttgtggcatttatctacaaaattttgtaaatttttatgggctattattaccttatcttttccttaccaatgaaagcctcaatta 2026990  T
Q  204 -ttttttcgacgtatgatatataatcctcaat 234  Q
     ||||||||| ||| |||||||| ||||||||    
T  2026991 tttttttcgaggtaggatatatagtcctcaat 2027022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 1958332 - 1958286
Alignment:
Q  64 tgttcgtgatctatttgtaagattgtctctcgagttatataacacca 110  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  1958332 tgttcgtgatctatttgtaagattgtctctcgagttatataagacca 1958286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 6098672 - 6098598
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||||| |||||||| || | | ||||||||||| ||| ||| ||||||||||| ||||||||||||    
T  6098672 tggtgaagttaatactatagcatcaaaaatatagtgagtaacaccccactgtttgtacagtgacatcaaaagttc 6098598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 27082992 - 27082918
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| | |||||||| || ||||||||||||||| ||| ||| ||||| ||||||||| ||||||||    
T  27082992 tggtgaagttaacactatagcatcaaaagtgtagtgagtaacaccccactgtttgtgcagtggcattaaaagttc 27082918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 11727060 - 11727134
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| | |||| ||| || ||||| || |||||| ||| |||||||||| |||||||||||||||||    
T  11727060 tggtgaagttaacactataacatcaaaagtgttgtaagtaacaccccactatttgtatagtggcatcaaaagttc 11727134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 13307659 - 13307733
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| | |||| ||| || ||||| ||||||||| ||  ||||||||||||||| ||||||||||||    
T  13307659 tggtgaagttaacactataacatcaaaagtgttgtgagtaacacctcactatttgtacagtgacatcaaaagttc 13307733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 5300095 - 5300026
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| | |||||||| || ||||| || |||| | | ||||| ||||||||||||||||||||||||    
T  5300095 aagttaacactatagcatcaaaagtgttgtaagtagcactctactgtttgtacagtggcatcaaaagttc 5300026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Original strand, 34895008 - 34895077
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| | |||| ||| |||| ||||||||||||| | | ||| |||||| |||||||||||||||||    
T  34895008 aagttaacactataacatcaacactgtagtgagtaacactccactgtttgtaaagtggcatcaaaagttc 34895077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 41362580 - 41362625
Alignment:
Q  543 tgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||||||||| ||| |||||||||| |||| ||||||||||||    
T  41362580 tgtagtgagtaacaccccactatttgtatagtgacatcaaaagttc 41362625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 25701231 - 25701157
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||||||||||| |||||| ||| || ||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  25701231 tggtaaagttaacattataacatcaaaagtgtagtgagtaacaccctactgtttgtacagtgacatcaaaagttc 25701157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 52364468 - 52364427
Alignment:
Q  20 attcctgggaataaattgtgtatccatgaaacaaacgcaccc 61  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  52364468 attcctgggaataaattgtgtatccatgaaacaaacgcaccc 52364427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 42492718 - 42492761
Alignment:
Q  20 attcctgggaataaattgtgtatccatgaaacaaacgcacccta 63  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  42492718 attcctgagaataaattgtgtatccatgaaacaaacgcacccta 42492761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 37287771 - 37287845
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||||||||||| | |||| ||| || ||||| ||||||||| ||| ||| ||||||||||||||||||||||||    
T  37287771 tggtaaagttaacactataacatcaaaagtgttgtgagtaacaccccactgtttgtacagtggcatcaaaagttc 37287845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 49376004 - 49376078
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| |||||||||| || ||||| ||||||||| ||| |||  |||||||||||||||||||||||    
T  49376004 tggtgaagttaacattatagcatcaaaagtgtcgtgagtaacaccccactgcttgtacagtggcatcaaaagttc 49376078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 587
Target Start/End: Original strand, 27396653 - 27396726
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagtt 587  Q
    |||| ||||||| ||||||||||||| |||||  |||||||| ||||||| |||||||| || |||||||||||    
T  27396653 tggtgaagttaacattatagcattaaaagtgttatgagtaacaccctactgtttgtacaatgacatcaaaagtt 27396726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 46888326 - 46888257
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||||| |||| ||| || | ||||||||||||  ||| ||||||||||||| ||||||||||||||    
T  46888326 aagttaatactataacatcaaaattgtagtgagtaataccccactatttgtacagcggcatcaaaagttc 46888257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 588
Target Start/End: Original strand, 39397953 - 39398029
Alignment:
Q  512 tatggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||||| ||||||| | |||| |||||| ||||| ||||||||| ||| | | ||||||||||| ||||||||||||    
T  39397953 tatggtgaagttaacactataacattaaaagtgttgtgagtaacaccccattgtttgtacagtgacatcaaaagttc 39398029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 588
Target Start/End: Original strand, 4598056 - 4598103
Alignment:
Q  541 agtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||| ||||||||| ||| ||| ||||||||||||||||||||||||    
T  4598056 agtgttgtgagtaacaccccactgtttgtacagtggcatcaaaagttc 4598103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 34948266 - 34948197
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| | |||| ||| || ||||| ||||||||| ||| ||| |||||| |||||||||||||||||    
T  34948266 aagttaacactataacatcaaaagtgttgtgagtaacaccccactgtttgtaaagtggcatcaaaagttc 34948197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 588
Target Start/End: Original strand, 37775739 - 37775780
Alignment:
Q  547 gtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||    
T  37775739 gtgagtaacaccccactgtttgtacagtggcatcaaaagttc 37775780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 514 - 587
Target Start/End: Original strand, 11898039 - 11898112
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagtt 587  Q
    ||||||||||||||||||||||| || |||| | |||||||| |||||||| |||||||||| |||||||||||    
T  11898039 tggtaaagttaatattatagcatcaaaagtgcactgagtaacaccctactagttgtacagtgacatcaaaagtt 11898112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 6696822 - 6696865
Alignment:
Q  20 attcctgggaataaattgtgtatccatgaaacaaacgcacccta 63  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  6696822 attcctaggaataaattgtgtatccatgaaacaaacgcacccta 6696865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 9935460 - 9935417
Alignment:
Q  20 attcctgggaataaattgtgtatccatgaaacaaacgcacccta 63  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  9935460 attcctaggaataaattgtgtatccataaaacaaacgcacccta 9935417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 5112451 - 5112377
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||||| |||| ||| || | | ||||||||||| ||| ||| ||||||||||||||||||||||||    
T  5112451 tggtgaagttaatactataacataaaaaatatagtgagtaacaccccactgtttgtacagtggcatcaaaagttc 5112377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 588
Target Start/End: Original strand, 25668671 - 25668760
Alignment:
Q  498 tttttagaaaattctatggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||||||||||| ||||||| | | || ||| || ||||| ||||||||| ||| ||| |||| |||||||||||||||||||    
T  25668671 ttttaagaaaattctatggtgaagttaacact-taacatcaaaagtgttgtgagtaacaccccactgtttgaacagtggcatcaaaagttc 25668760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 40133422 - 40133496
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| ||||||| || || | ||| ||||||||| ||| |||||||||||| |||||||||||||||    
T  40133422 tggtgaagttaacattatagtatcaaaaatgttgtgagtaacaccccactatttgtacaatggcatcaaaagttc 40133496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 7693267 - 7693341
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| | |||| ||| || ||||| |||||||||  || ||| ||||||||||||||||||||||||    
T  7693267 tggtgaagttaacactataacatcaaaagtgttgtgagtaacatcccactgtttgtacagtggcatcaaaagttc 7693341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 31786784 - 31786710
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| | |||||||| || | ||||||||| |  |||| ||| ||||||||||||||||||||||||    
T  31786784 tggtgaagttaacactatagcatgaaaaatgtagtgagcactgccccactgtttgtacagtggcatcaaaagttc 31786710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Original strand, 699192 - 699261
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| | |||||||| || | | ||||||||||| ||| ||| ||||||||||| ||||||||||||    
T  699192 aagttaacactatagcataaaaaatctagtgagtaacaccccactgtttgtacagtgacatcaaaagttc 699261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 23116355 - 23116286
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| |||||| ||| || | ||||||||||| | ||| ||| |||||||||||| |||||||||||    
T  23116355 aagttaacattataacatcaaaactgtagtgagtagcaccccactgtttgtacagtggaatcaaaagttc 23116286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 35511610 - 35511541
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| |||||| ||| |||| ||||||||||||| | | ||| |||||| |||| ||||||||||||    
T  35511610 aagttaacattataacatcaacactgtagtgagtaacactccactgtttgtaaagtgacatcaaaagttc 35511541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 39346022 - 39346065
Alignment:
Q  20 attcctgggaataaattgtgtatccatgaaacaaacgcacccta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39346022 attcctgggaataaattgtgtatccatgaaacaaacgcacccta 39346065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 16415678 - 16415753
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccct-actatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| | |||||||| || ||||||||||||||| |||| | | ||||||||||||||||||||||||    
T  16415678 tggtgaagttaacactatagcatcaaaagtgtagtgagtaacaccctaaatgtttgtacagtggcatcaaaagttc 16415753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 588
Target Start/End: Original strand, 32216072 - 32216162
Alignment:
Q  498 tttttagaaaattctatggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||| |||||||||||||| ||||||| | |||| ||| || | ||||||||||||| | | ||| |||||||| |||| ||||||||||    
T  32216072 tttttggaaaattctatggtgaagttaacactataacatcaaaaatgtagtgagtaacacaccactgtttgtacaatggcgtcaaaagttc 32216162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 21289734 - 21289779
Alignment:
Q  543 tgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  21289734 tgtagtgagtaacaccccactgtttgtacagtggcatcaaaagttc 21289779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 3309181 - 3309254
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||||||||||| | |||| ||| || ||||| ||||||||| ||| ||| |||||||||||| |||||||||||    
T  3309181 tggtaaagttaacactataacatcaaaagtgttgtgagtaacaccc-actgtttgtacagtggtatcaaaagttc 3309254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 38823247 - 38823321
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| | |||||||| || | ||| | ||||||| ||| ||||||||||||||| ||||||||||||    
T  38823247 tggttaagttaacactatagcatcaaaattgttgcgagtaacaccccactatttgtacagtgtcatcaaaagttc 38823321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 47279222 - 47279296
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| ||||||  || || ||||| ||||||||| ||| ||| |||||||||||||||| |||||||    
T  47279222 tggtgaagttaacattatactatcaaaagtgttgtgagtaacaccccactgtttgtacagtggcatcgaaagttc 47279296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 34012515 - 34012446
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| | |||| ||| |||| ||||||||||||| | | ||| |||||| |||||||||||||||||    
T  34012515 aagttaacactataacatcaacactgtagtgagtaacactccactgtttgtaaagtggcatcaaaagttc 34012446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Original strand, 48620675 - 48620744
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| | |||| ||| || ||||| ||||||||| ||| ||| ||||||||||| ||||||||||||    
T  48620675 aagttaacaatataacatcaaaagtgttgtgagtaacaccccactgtttgtacagtgacatcaaaagttc 48620744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 10359363 - 10359289
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| ||||| ||||||||| || |||||||||||||||  |||||||||| ||||||| ||||||||||||    
T  10359363 tggtaaaattaatcttatagcatcaaaagtgtagtgagtaacatcctactatttatacagtgacatcaaaagttc 10359289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 588
Target Start/End: Original strand, 26980333 - 26980409
Alignment:
Q  512 tatggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||||| ||||||| |||||||||| || ||||| ||||||||| ||| ||  ||||||||||||||||||||||||    
T  26980333 tatggtgaagttaacattatagcatcaaaagtgttgtgagtaacaccccacggtttgtacagtggcatcaaaagttc 26980409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 9972986 - 9972950
Alignment:
Q  27 ggaataaattgtgtatccatgaaacaaacgcacccta 63  Q
    |||||||||||||||||||||||||||||||||||||    
T  9972986 ggaataaattgtgtatccatgaaacaaacgcacccta 9972950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 5657625 - 5657556
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| | |||| ||| || ||||| ||||||||| ||| ||| ||||||||||||||||||||||||    
T  5657625 aagttaacactataacatcaaaagtgttgtgagtaacaccccactgtttgtacagtggcatcaaaagttc 5657556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 514 - 587
Target Start/End: Original strand, 12165764 - 12165837
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagtt 587  Q
    |||| ||||||| | ||||||||  | ||||| ||||||||| ||| ||| |||||||||||||||||||||||    
T  12165764 tggtgaagttaacactatagcatccaaagtgttgtgagtaacaccccactgtttgtacagtggcatcaaaagtt 12165837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 518 - 583
Target Start/End: Complemental strand, 34362293 - 34362228
Alignment:
Q  518 aaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaa 583  Q
    |||||||| | |||||||| || ||||| ||||||||| ||| ||| |||||||||||||||||||    
T  34362293 aaagttaacactatagcatcaaaagtgttgtgagtaacaccccactgtttgtacagtggcatcaaa 34362228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 586
Target Start/End: Complemental strand, 41765224 - 41765155
Alignment:
Q  517 taaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagt 586  Q
    |||||| |||| |||||||| || ||||||||||||| | ||| ||| ||||||| ||||||||||||||    
T  41765224 taaagtcaatactatagcatcaaaagtgtagtgagtagcaccccactgtttgtacggtggcatcaaaagt 41765155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 4582931 - 4583005
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||||| ||||| || || | ||| ||||||||| ||| |||||||||||| || ||||||||||||    
T  4582931 tggtgaagttaatactatagtatcaaaaatgttgtgagtaacaccccactatttgtacaatgacatcaaaagttc 4583005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 587
Target Start/End: Original strand, 6546536 - 6546604
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagtt 587  Q
    ||||||| | |||||||| || ||||| | ||||||| ||| ||||||||||||||  |||||||||||    
T  6546536 aagttaacactatagcatcaaaagtgttgcgagtaacaccccactatttgtacagtaacatcaaaagtt 6546604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 587
Target Start/End: Original strand, 8861302 - 8861370
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagtt 587  Q
    ||||||| | |||||||| || |||||  ||| |||| ||| ||| |||||||||||||||||||||||    
T  8861302 aagttaacactatagcatcaaaagtgttatgaataacaccccactgtttgtacagtggcatcaaaagtt 8861370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 588
Target Start/End: Original strand, 21991646 - 21991722
Alignment:
Q  512 tatggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||||| ||||||| | |||||||| || | ||| | ||||||| ||| ||| ||||||||||| ||||||||||||    
T  21991646 tatggtgaagttaacactatagcatcaaaattgttgcgagtaacaccccactgtttgtacagtgtcatcaaaagttc 21991722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 19313889 - 19313963
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| |||||||||| || ||||| ||||||||| || |||||||| ||||||| ||||||||||||    
T  19313889 tggtgaagttaacattatagcatcaaaagtgttgtgagtaacaccttactatttatacagtgacatcaaaagttc 19313963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 4264243 - 4264169
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||||||||||| | |||||||| || ||||| |||||||||  || ||| ||||||||||| ||||||||||||    
T  4264243 tggtaaagttaacactatagcatcaaaagtgttgtgagtaacatcccactgtttgtacagtgacatcaaaagttc 4264169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 514 - 587
Target Start/End: Original strand, 13711501 - 13711574
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagtt 587  Q
    |||| ||||||| |||||||||| || ||||| ||||||||| ||| ||  ||||||||||| |||||||||||    
T  13711501 tggtgaagttaacattatagcatcaaaagtgttgtgagtaacaccccacagtttgtacagtgacatcaaaagtt 13711574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 33660529 - 33660460
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| | |||| ||| || ||||| ||||||||| ||| ||| ||||||||||||||||||||||||    
T  33660529 aagttaacactataacatcaaaagtgttgtgagtaacacccaactgtttgtacagtggcatcaaaagttc 33660460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 41464016 - 41463942
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||||| ||||  || || ||||| ||||||||| ||  ||| ||||||||||||||||||||||||    
T  41464016 tggtgaagttaatactataaaatcaaaagtgttgtgagtaacacctcactgtttgtacagtggcatcaaaagttc 41463942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 43771005 - 43770931
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| | |||| ||| || ||||| ||||||||| ||| ||| ||| ||||||||||||||||||||    
T  43771005 tggtgaagttaacactataacatcaaaagtgttgtgagtaacaccccactgtttatacagtggcatcaaaagttc 43770931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 4763697 - 4763742
Alignment:
Q  543 tgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||||||||| ||| ||| ||||||||||| ||||||||||||    
T  4763697 tgtagtgagtaacaccccactgtttgtacagtgacatcaaaagttc 4763742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 519 - 588
Target Start/End: Original strand, 15491657 - 15491726
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| ||| || ||| || ||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  15491657 aagttaacattgtaacatcaaaagtgttgtgagtaacaccccactatttgtacagtggcatcaaaagttc 15491726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 3880086 - 3880012
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| ||||||| || || ||||| ||||||||| ||||||| |||||||| || ||||||||||||    
T  3880086 tggtgaagttaacattatagtatcaaaagtgttgtgagtaacaccctactgtttgtacaatgacatcaaaagttc 3880012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 6088945 - 6089019
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| | ||||| || || ||||| ||||||||||||| ||| |||||| |||||||||||||||||    
T  6088945 tggtgaagttaacactatagtatcaaaagtgttgtgagtaacgccccactgtttgtaaagtggcatcaaaagttc 6089019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 18498470 - 18498545
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccct-actatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| |||||||||| || ||||||||||| ||| |||  ||  ||||||||||||||||||||||||    
T  18498470 tggtgaagttaacattatagcatcaaaagtgtagtgagcaacacccccacagtttgtacagtggcatcaaaagttc 18498545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 519 - 588
Target Start/End: Original strand, 2007966 - 2008035
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| | |||||| |||| ||||| ||||||||| ||| ||| ||||||||||||||||||||||||    
T  2007966 aagttaacactatagcgttaaaagtgttgtgagtaacaccccactgtttgtacagtggcatcaaaagttc 2008035  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 37203124 - 37203169
Alignment:
Q  543 tgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  37203124 tgtagtgagtaacaccccactgtttgtacagtggcatcaaaagttc 37203169  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 517 - 588
Target Start/End: Original strand, 32373503 - 32373572
Alignment:
Q  517 taaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||||| | |||||||| || ||||| ||||||||| ||  ||| ||||||||||||||||||||||||    
T  32373503 taaagttaacactatagcatcaaaagtgttgtgagtaactcc--actgtttgtacagtggcatcaaaagttc 32373572  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 545 - 588
Target Start/End: Original strand, 3362312 - 3362355
Alignment:
Q  545 tagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||||||||||  || ||||||||||||||||||||||||||||    
T  3362312 tagtgagtaacatcccactatttgtacagtggcatcaaaagttc 3362355  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 541 - 587
Target Start/End: Original strand, 11466879 - 11466925
Alignment:
Q  541 agtgtagtgagtaacgccctactatttgtacagtggcatcaaaagtt 587  Q
    ||||| ||||||||| ||| ||| |||||||||||||||||||||||    
T  11466879 agtgttgtgagtaacaccccactgtttgtacagtggcatcaaaagtt 11466925  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Complemental strand, 22446212 - 22446139
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||| |||||| ||| || | | ||||||||||| ||| ||| ||||||||||||||||||||||||    
T  22446212 tggtgaagttaacattatatcatcaaaaatatagtgagtaacaccccact-tttgtacagtggcatcaaaagttc 22446139  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 25579767 - 25579841
Alignment:
Q  514 tggtaaagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    |||| ||||||||| |||||||| || ||||| |||| ||||   ||||||||| ||||||| ||||||||||||    
T  25579767 tggtgaagttaatactatagcatcaaaagtgttgtgaataacattctactatttatacagtgacatcaaaagttc 25579841  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Original strand, 4015493 - 4015562
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagttc 588  Q
    ||||||| | |||||||| || ||||| ||||||||| ||| ||| |||||| |||| ||||||||||||    
T  4015493 aagttaacactatagcatcaaaagtgttgtgagtaacacccaactgtttgtagagtgacatcaaaagttc 4015562  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 587
Target Start/End: Complemental strand, 94526 - 94458
Alignment:
Q  519 aagttaatattatagcattaacagtgtagtgagtaacgccctactatttgtacagtggcatcaaaagtt 587  Q
    ||||||| |||||| ||| || | ||||||||||||| ||| ||| |||||||||||||||||||||||    
T  94526 aagttaacattataacatcaaaattgtagtgagtaacaccccactgtttgtacagtggcatcaaaagtt 94458  T

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