View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13145_low_1 (Length: 592)
Name: NF13145_low_1
Description: NF13145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13145_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 2 - 576
Target Start/End: Complemental strand, 37385938 - 37385357
Alignment:
| Q |
2 |
aacacaatccaatttaaattataaccacttgctcaaagtgtccgagagtctctc----actgcttagatcgatcaaccagatattttcggtttttcaaag |
97 |
Q |
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| T |
37385938 |
aacacaatccaatttaaattataaccacttgctcaaagtgtccgagagtctctctctcactgctgagatcgatcaaccagatattttcggtttttcaaag |
37385839 |
T |
|
| Q |
98 |
cagtatttattccatcacaagttcacaactcaagtcacattagagttagttactacacatgacaatgaaaggaggacagagaaagaaccttctatacaca |
197 |
Q |
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| T |
37385838 |
cagtatttattccatcacaagttcacaactcaagtcacattagagttagttactacacatgacaatgaaaggaggacagagaaagaaccttctatacaca |
37385739 |
T |
|
| Q |
198 |
aaca---ttctgtgcttccttttgcttcaatggcttgatctctccttagtaaagagtgctaaggttccggcgatcatagtgttcggcgactcatccgtgg |
294 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37385738 |
aacaatattctgtgcatccttttgcttcaatggcttgatctctccttagtaaagagtgctaaggttccggcgatcatagtgttcggcgactcatccgtgg |
37385639 |
T |
|
| Q |
295 |
atgccgggaacaacaacttcatatcgacggttgctcggagcaatttccagccgtatggacgtgattttctgggtgggaagccaactgggagattcagcaa |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37385638 |
atgccgggaacaacaacttcatatcgacggttgctcggagcaatttccagccgtatggacgtgattttctgggtgggaagccaactgggagattcagcaa |
37385539 |
T |
|
| Q |
395 |
tggtagaatagcgactgatttcatatcagaagcatttggtatcaaaccatacataccggcatacttggaccctagctttaacatctcacagtttgcaact |
494 |
Q |
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| T |
37385538 |
tggtagaatagcaactgatttcatatcagaagcatttggtatcaaaccatacataccagcatacttggaccctagctttaacatctcacagtttgcaact |
37385439 |
T |
|
| Q |
495 |
ggtgtctcctttgcttctgctgctactggttatgataatgccacttcagatgtcctggtacattatatatacacatttaatt |
576 |
Q |
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| T |
37385438 |
ggtgtctcctttgcttctgctgctactggttatgataatgccacttcagatgtcctggtacattatatatacacatttaatt |
37385357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 249 - 547
Target Start/End: Original strand, 36599013 - 36599311
Alignment:
| Q |
249 |
agtgctaaggttccggcgatcatagtgttcggcgactcatccgtggatgccgggaacaacaacttcatatcgacggttgctcggagcaatttccagccgt |
348 |
Q |
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||||| ||||||||||| || || |||||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||| |
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| T |
36599013 |
agtgcaaaggttccggcaataatcgtgttcggagactcttccgttgatgccgggaataacaacttcattccgacggttgcacggagcaattttcagccgt |
36599112 |
T |
|
| Q |
349 |
atggacgtgattttctgggtgggaagccaactgggagattcagcaatggtagaatagcgactgatttcatatcagaagcatttggtatcaaaccatacat |
448 |
Q |
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|||||||||| |||| || || || | || || |||||| ||||| |||||| | || ||||||||| ||||| | |||||||| ||| || | |
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| T |
36599113 |
atggacgtgactttcaaggcggaaaagcgaccggaagattctcaaatgggagaataccaaccgatttcatagcagaatcttttggtataaaagaatctgt |
36599212 |
T |
|
| Q |
449 |
accggcatacttggaccctagctttaacatctcacagtttgcaactggtgtctcctttgcttctgctgctactggttatgataatgccacttcagatgt |
547 |
Q |
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|| || |||||||| || | | ||| || ||| | ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36599213 |
gcctgcttacttggatcccaagtataatatttcagattttgcaactggggtcagttttgcttctgctgctactggttatgataatgcaacttcagatgt |
36599311 |
T |
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