View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13145_low_6 (Length: 350)
Name: NF13145_low_6
Description: NF13145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13145_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 50975295 - 50975611
Alignment:
| Q |
15 |
ggcaaactttgtttcgcatatatggtttgaaagttgtcgtgtaatggcgacattggactaattctcatttcgatttgttagttagaatgtagagaacaaa |
114 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50975295 |
ggcaatctttgtttcgcatatatggtttgaaagttgtcgtgtaatggcgacattggactaattctcatttcgatttgttagttagaatgtagagaacaaa |
50975394 |
T |
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| Q |
115 |
gatgactagatttgggcatgttgaggctggcttaacaatcaacacaattatttgaatcttggaagaaatttatagtgctcaggagattgaggagaagcta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50975395 |
gatgactagatttgggcatgttgaggctggcttaacaatcaacacaattatttgaatcttggaagaaatttatagtgctcaggagattgaggagaagcta |
50975494 |
T |
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| Q |
215 |
gaacagcttttttgctagcttagtttcaatatatacaaccatctctctcacttcctctccatgccaatgaagaaaatttcactctcttccatatcttttc |
314 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50975495 |
gaacagcttttttgctagcttagtttca----atacaaccatctctctcacttcctctccatgccaatgaagaaaatttcactctcttccatgtcttttc |
50975590 |
T |
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| Q |
315 |
cactttcacagtcgtgtattt |
335 |
Q |
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| T |
50975591 |
cactttcacaatcgtgtattt |
50975611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 37618789 - 37618716
Alignment:
| Q |
256 |
tctctctcacttcctctccatgccaatgaagaaaatttcactctcttccatatcttttccactttcacagtcgt |
329 |
Q |
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| T |
37618789 |
tctctctctctctctctccacgccaatgaagaaaatttcactctcttccatgtcttttctactttcaccgtcgt |
37618716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 8541278 - 8541315
Alignment:
| Q |
292 |
ttcactctcttccatatcttttccactttcacagtcgt |
329 |
Q |
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| T |
8541278 |
ttcactctcttccatgtcttttccactttcacagtcgt |
8541315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 23820613 - 23820650
Alignment:
| Q |
292 |
ttcactctcttccatatcttttccactttcacagtcgt |
329 |
Q |
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| T |
23820613 |
ttcactctcttccatgtcttttccactttcacagtcgt |
23820650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 40172993 - 40172956
Alignment:
| Q |
292 |
ttcactctcttccatatcttttccactttcacagtcgt |
329 |
Q |
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| T |
40172993 |
ttcactctcttccatgtcttttccactttcacagtcgt |
40172956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 19766377 - 19766422
Alignment:
| Q |
281 |
atgaagaaaatttcactctcttccatatcttttccactttcacagt |
326 |
Q |
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||||||||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
19766377 |
atgaagaaaatttcaatctctcccatgtcttttccactttcacagt |
19766422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 17682135 - 17682176
Alignment:
| Q |
281 |
atgaagaaaatttcactctcttccatatcttttccactttca |
322 |
Q |
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| T |
17682135 |
atgaagaaaatttcaatctctcccatgtcttttccactttca |
17682176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 84286 - 84242
Alignment:
| Q |
222 |
ttttttgctagcttagtttcaatatatacaaccatctctctcacttcct |
270 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
84286 |
ttttttgctagcttagtttcaata----caaccatctctctcacttcct |
84242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 35560362 - 35560319
Alignment:
| Q |
281 |
atgaagaaaatttcactctcttccat-atcttttccactttcac |
323 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
35560362 |
atgaagaaaatttcactatcttccatcatcttttccactttcac |
35560319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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