View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13146_high_6 (Length: 218)
Name: NF13146_high_6
Description: NF13146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13146_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 47379532 - 47379691
Alignment:
| Q |
1 |
gacgtataactttgtcaaagattctccattacaaaaaataaggctaaagaaaatgcatttacatatggacgctgatgcaaatatcattctttctctctct |
100 |
Q |
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| T |
47379532 |
gacgtataactttgtcaaagattctccattacaaaaaataaggctaaagaaaatgcatttacatatggacgctgatgcaaatatcattctttctctctct |
47379631 |
T |
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| Q |
101 |
aatcaacttgtcctacttagctaggccctccctatgggtttaagcctttgattaataagg |
160 |
Q |
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| T |
47379632 |
aatcaacttgtcctacttagctaggccctccctatgggtttaagcctttgattaataagg |
47379691 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 47379705 - 47379740
Alignment:
| Q |
171 |
caagatagaaattggtactaagatgcatattcttcg |
206 |
Q |
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| T |
47379705 |
caagatagaaattggtactaagatgcatattgttcg |
47379740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 615952 - 615864
Alignment:
| Q |
17 |
aaagattctccattacaaaaaataaggctaaagaaaatgcatttacatatggacgctgatgcaaatatcattctttctctctctaatca |
105 |
Q |
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| T |
615952 |
aaagattctccattaattaaaacaaagctaaagaacatgcatttataaatggattctgatgcaaatatcattgttcctctctctcatca |
615864 |
T |
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