View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13146_low_1 (Length: 701)

Name: NF13146_low_1
Description: NF13146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13146_low_1
NF13146_low_1
[»] chr4 (17 HSPs)
chr4 (420-682)||(34140064-34140326)
chr4 (499-682)||(34131215-34131398)
chr4 (60-136)||(34140342-34140418)
chr4 (509-682)||(34136906-34137079)
chr4 (278-393)||(40333269-40333383)
chr4 (511-660)||(34126095-34126244)
chr4 (1-60)||(34140950-34141009)
chr4 (142-196)||(40333025-40333079)
chr4 (1-60)||(34133376-34133435)
chr4 (1-60)||(34137287-34137346)
chr4 (535-663)||(34142729-34142860)
chr4 (239-279)||(40333163-40333203)
chr4 (1-48)||(34127115-34127162)
chr4 (232-270)||(40333076-40333114)
chr4 (221-261)||(6020123-6020164)
chr4 (221-261)||(48583854-48583895)
chr4 (138-182)||(48583945-48583989)
[»] chr7 (3 HSPs)
chr7 (136-270)||(13066753-13066886)
chr7 (276-396)||(13066481-13066600)
chr7 (239-279)||(13066664-13066704)
[»] chr8 (2 HSPs)
chr8 (276-395)||(17074356-17074474)
chr8 (276-395)||(17573796-17573914)
[»] chr5 (1 HSPs)
chr5 (200-261)||(41312972-41313034)
[»] chr2 (1 HSPs)
chr2 (218-252)||(13557696-13557730)
[»] chr6 (1 HSPs)
chr6 (218-270)||(12868900-12868952)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 420 - 682
Target Start/End: Complemental strand, 34140326 - 34140064
Alignment:
Q  420 gtccaatttatgtgtcaaaatataatttaggattgcaattcaattcaatgagtattcaaaggtagattaacttttaaactaatgggttgtttttaaaatt 519  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34140326 gtccaatttctgtgtcaaaatataatttaggattgcaattcaattcaatgagtattcaaaggtagattaacttttaaactaatgggttgtttttaaaatt 34140227  T
Q  520 gatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagcttatagctttaagcttaggacttg 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34140226 gatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagcttatagctttaagcttaggacttg 34140127  T
Q  620 aagcaaagaggtttgaagaattctacaaggatcaaactagctttataagattcaactactatc 682  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  34140126 aagcaaagaggtttgaagaattcttcaagtatcaaactagctttataagattcaactactatc 34140064  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 499 - 682
Target Start/End: Complemental strand, 34131398 - 34131215
Alignment:
Q  499 taatgggttgtttttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagctta 598  Q
    ||||||||||| ||||||||||||||| ||||||| || | |||| |||||||||||||  ||||| |||||||||||||   || |||  ||||||| |    
T  34131398 taatgggttgtgtttaaaattgatgtctacatgagcagggctatacttgaagagtatattcaagaggtggaaaagctggcatataggttgctggagctaa 34131299  T
Q  599 tagctttaagcttaggacttgaagcaaagaggtttgaagaattctacaaggatcaaactagctttataagattcaactactatc 682  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||    
T  34131298 tagctctaagcttaggacttgaagcaaagaggtttgaagaattcttcaagtatcaaactagctttattagattcaaccactatc 34131215  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 34140418 - 34140342
Alignment:
Q  60 tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34140418 tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta 34140342  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 509 - 682
Target Start/End: Complemental strand, 34137079 - 34136906
Alignment:
Q  509 tttttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagcttatagctttaag 608  Q
    ||||||||||| |||| ||||| || || | |||| ||||||||||||  ||||||||||||||| ||||    |||||  | ||||| |||||||| ||    
T  34137079 tttttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgag 34136980  T
Q  609 cttaggacttgaagcaaagaggtttgaagaattctacaaggatcaaactagctttataagattcaactactatc 682  Q
    ||||||| |||||||||||||||||||||| |||| ||| ||||| ||||||||||| ||||||||| ||||||    
T  34136979 cttaggagttgaagcaaagaggtttgaagagttcttcaaagatcacactagctttattagattcaaccactatc 34136906  T

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Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 278 - 393
Target Start/End: Original strand, 40333269 - 40333383
Alignment:
Q  278 ggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgtcg 377  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||  |  |||||| |||||||| ||||||||||||||||||    
T  40333269 ggaggcaaaatttgtcatttgtgtcaaatcaaaattaggaaaaaaataggaagtggtaattacaa-acttgttgtgtaaatatgacgacaaattttgtcg 40333367  T
Q  378 tgtattttagcatttt 393  Q
    ||||||||||||||||    
T  40333368 tgtattttagcatttt 40333383  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 511 - 660
Target Start/End: Complemental strand, 34126244 - 34126095
Alignment:
Q  511 tttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagcttatagctttaagct 610  Q
    ||||||||| ||||||||||||| ||   ||||||||||||||||||  | |||||||||||  |||||  ||||||  ||||| | |||||||| ||||    
T  34126244 tttaaaattaatgtcaacatgagcaggaatataattgaagagtatattaaggagatggaaaatttggcctctaagttgctggagttaatagctttgagct 34126145  T
Q  611 taggacttgaagcaaagaggtttgaagaattctacaaggatcaaactagc 660  Q
    |||| |||||||||| ||||||||||||||||| |||||||  |||||||    
T  34126144 tagggcttgaagcaatgaggtttgaagaattcttcaaggatacaactagc 34126095  T

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Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34141009 - 34140950
Alignment:
Q  1 ttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34141009 ttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 34140950  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 40333025 - 40333079
Alignment:
Q  142 ctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttg 196  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40333025 ctgctatacagcacgacaaagtcagcacacgagagccacacgaacatacaatttg 40333079  T

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Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34133435 - 34133376
Alignment:
Q  1 ttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 60  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  34133435 ttgctcagagtttggaggagaagaagaaggttgctagagatgaggtcaatcctactggtt 34133376  T

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Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34137346 - 34137287
Alignment:
Q  1 ttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 60  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||    
T  34137346 ttgctcagagtttggaggagaagaggaaggttgctagagatgaaatcaatccaactggtt 34137287  T

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Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 535 - 663
Target Start/End: Complemental strand, 34142860 - 34142729
Alignment:
Q  535 agagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagcttatagctttaagcttaggacttgaagcaaagaggtttg 634  Q
    ||||||||  || ||||||||||  |||||||||||||||| |||  || |||  | ||||| |||||| | ||||||||| ||||||||||||||||||    
T  34142860 agagttattcttaaagagtatattaaagagatggaaaagctagcctttacgttgctagagctcatagctcttagcttaggagttgaagcaaagaggtttg 34142761  T
Q  635 aagaattct---acaaggatcaaactagcttt 663  Q
    |||||||||    ||| |||||||||||||||    
T  34142760 aagaattcttcatcaaagatcaaactagcttt 34142729  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 40333163 - 40333203
Alignment:
Q  239 atagtatatattaaaaaacaatgctaccaaaggaatggtgg 279  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40333163 atagtatatattaaaaaacaatgctaccaaaggaatggtgg 40333203  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34127162 - 34127115
Alignment:
Q  1 ttgctcagagtttggaggagaagaagaaggttgctagagatgagatca 48  Q
    ||||||| |||||||||||||| | ||||||||| |||||||||||||    
T  34127162 ttgctcaaagtttggaggagaaaatgaaggttgccagagatgagatca 34127115  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 40333076 - 40333114
Alignment:
Q  232 tttgtttatagtatatattaaaaaacaatgctaccaaag 270  Q
    |||||||||||||||||||||||||||||| || |||||    
T  40333076 tttgtttatagtatatattaaaaaacaatgttatcaaag 40333114  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 6020123 - 6020164
Alignment:
Q  221 ttattgatgcttttgtttatagta-tatattaaaaaacaatg 261  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  6020123 ttattgatgcttttgtatatagtagtatattaaaaaacaatg 6020164  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 48583895 - 48583854
Alignment:
Q  221 ttattgatgcttttgtttatagta-tatattaaaaaacaatg 261  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  48583895 ttattgatgcttttgtatatagtagtatattaaaaaacaatg 48583854  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 48583989 - 48583945
Alignment:
Q  138 agcgctgctatacagcaagacaaagtcagcacacgagagccacac 182  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||||    
T  48583989 agcgctgctatacagcacgacaaaatcaacacacgaaagccacac 48583945  T

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Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 136 - 270
Target Start/End: Complemental strand, 13066886 - 13066753
Alignment:
Q  136 agagcgctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttgctgtattattagttttctttcagtttattgatgcttttg 235  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  13066886 agagcactgctatacagcatgacaaagtcagcacacgagagccacacgaacatacaatttgttgtattattag-tttctttcagtttattgatgcttttg 13066788  T
Q  236 tttatagtatatattaaaaaacaatgctaccaaag 270  Q
    |||||||||||||||||||||||||| || |||||    
T  13066787 tttatagtatatattaaaaaacaatgttatcaaag 13066753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 13066600 - 13066481
Alignment:
Q  276 gtggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgt 375  Q
    ||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||  |  |||||||||||||||||| |||||||||||||    
T  13066600 gtggaggaaaaatttgtcatttgtgtcaaatcaaaattaggaaaaaaataggaagtggtaattacaa-acttgtcgtgtaaatctgtcgacaaattttgt 13066502  T
Q  376 cgtgtattttagcattttcct 396  Q
    |||||||||||||||||||||    
T  13066501 cgtgtattttagcattttcct 13066481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 13066704 - 13066664
Alignment:
Q  239 atagtatatattaaaaaacaatgctaccaaaggaatggtgg 279  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  13066704 atagtatatattaaaaaacaatgctaccaaagaaatggtgg 13066664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 276 - 395
Target Start/End: Complemental strand, 17074474 - 17074356
Alignment:
Q  276 gtggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgt 375  Q
    ||||||||| |||||||||||||||||||||||||||||||       ||| ||||||||||   |  ||||||||||||||| ||||||||| ||||||    
T  17074474 gtggaggcataatttgtcatttgtgtcaaatcaaaattaggaaaaaaatagtaagtggtaataacaa-acttgtcgtgtaaatttgacgacaatttttgt 17074376  T
Q  376 cgtgtattttagcattttcc 395  Q
    ||||||||||| ||||||||    
T  17074375 cgtgtattttaacattttcc 17074356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 276 - 395
Target Start/End: Original strand, 17573796 - 17573914
Alignment:
Q  276 gtggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgt 375  Q
    ||||||||| |||||||||||||||||||||||||||||||       ||| ||||||||||   |  ||||||||||||||| ||||||||| ||||||    
T  17573796 gtggaggcataatttgtcatttgtgtcaaatcaaaattaggaaaaaaatagtaagtggtaataacaa-acttgtcgtgtaaatttgacgacaatttttgt 17573894  T
Q  376 cgtgtattttagcattttcc 395  Q
    ||||||||||| ||||||||    
T  17573895 cgtgtattttaacattttcc 17573914  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 41312972 - 41313034
Alignment:
Q  200 tattattagttttctttcagtttattgatgcttttgtttatagta-tatattaaaaaacaatg 261  Q
    ||||| ||| |||||||  | |||||||||||||||| ||||||| |||||||||||||||||    
T  41312972 tattaatagatttctttatggttattgatgcttttgtatatagtagtatattaaaaaacaatg 41313034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 13557730 - 13557696
Alignment:
Q  218 agtttattgatgcttttgtttatagtatatattaa 252  Q
    ||||||||||||||||||| |||||||||||||||    
T  13557730 agtttattgatgcttttgtatatagtatatattaa 13557696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 12868952 - 12868900
Alignment:
Q  218 agtttattgatgcttttgtttatagtatatattaaaaaacaatgctaccaaag 270  Q
    ||||||| ||||||||||| || | ||||||||||||||| ||| ||||||||    
T  12868952 agtttatcgatgcttttgtataaaatatatattaaaaaaccatgttaccaaag 12868900  T

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