View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13146_low_2 (Length: 430)
Name: NF13146_low_2
Description: NF13146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13146_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 413
Target Start/End: Complemental strand, 15963489 - 15963096
Alignment:
| Q |
2 |
aaagtaggtaagtataatgtcgcttttgtgtagacaccgacacgtgttagacactgatac--aagttgtaacactaaatacacattttatgagtcaatac |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
15963489 |
aaagtaggtaagtataatgtcgcttttgtgtagacaccgacacgtgttagacactgatacacatatcgtaacactaaatacac----------------- |
15963407 |
T |
|
| Q |
100 |
acattttatgagtcagctatataagtttccatcagttttgtttgcttgtttttcttatctctaaccaataaacaatgaatggtgctagtgttgtgtttta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
15963406 |
--attttatgagtcagctatataagtttccatcagttttgtttgcttgtttttcttatctctaaccaataaacaatgaatggtgccagtgttgtgtttga |
15963309 |
T |
|
| Q |
200 |
gtacttttgttttatgtgttccttccacctaaaagaataaaggggggcaaaaacactaaaagataacaaggtgcttgtgattcatgttgccacttatcaa |
299 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15963308 |
gtacttt-gttttatgtgttccttccacctaaaagaataaatgggggcaagaacactaaaagataacaaggtgcttgtgattcatgttgccacttatcaa |
15963210 |
T |
|
| Q |
300 |
gttatgattgagacttgaattgatcacgaatttactatgatttaaagtataaagttagaaaaagagattaaagtgaaaaaatatatagaactatatattg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15963209 |
gttatgattgagacttgaattgatcacggatttactatgatttaaagtataaagttagaaaaagagattaaagtgaaaaaatatatagaactatagattg |
15963110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University