View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13146_low_5 (Length: 330)
Name: NF13146_low_5
Description: NF13146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13146_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 40092790 - 40092480
Alignment:
| Q |
5 |
tggtatggtctgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtt |
104 |
Q |
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| T |
40092790 |
tggtatggtttgtggtgctttgaagatcaagtttgtgatgaggctgtgaaggtatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtt |
40092691 |
T |
|
| Q |
105 |
tataggatccactttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtga |
204 |
Q |
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||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092690 |
tattggatccactttgtatactttggcaggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtga |
40092591 |
T |
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| Q |
205 |
agccaagaatatttggattcaaaagggtattcatttttcattgatccatttgctttcttcgtgttttgggatatgtatgaagatttagatgaagaatatg |
304 |
Q |
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| T |
40092590 |
agccaagaatatttggattcaaaagggtattcatttttcattgatccatttgctttcttcgtgttttgggatatgtatgaagatttagatgaagaatatg |
40092491 |
T |
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| Q |
305 |
agctagaataa |
315 |
Q |
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||||||||||| |
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| T |
40092490 |
agctagaataa |
40092480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 40121617 - 40121316
Alignment:
| Q |
1 |
gcagtggtatggtctgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttga |
100 |
Q |
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| T |
40121617 |
gcagtggtatggtctgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttga |
40121518 |
T |
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| Q |
101 |
agtttataggatccactttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactga |
200 |
Q |
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| T |
40121517 |
agtttattggatccactttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactga |
40121418 |
T |
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| Q |
201 |
gtgaagccaagaatatttggattcaaaagggtattcatttttcattgatccatttgctttcttcgtgttttgggatatgtatgaagatttagatgaagaa |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
40121417 |
gtgaagacaagaatatttggattcaaaagggtattcatttttcattgatccctttggtttcttagtgtttttggatatgtatgaagatttagatgaagaa |
40121318 |
T |
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| Q |
301 |
ta |
302 |
Q |
| |
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|| |
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| T |
40121317 |
ta |
40121316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 305
Target Start/End: Complemental strand, 40125262 - 40124962
Alignment:
| Q |
5 |
tggtatggtctgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtt |
104 |
Q |
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||||||||| ||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40125262 |
tggtatggtttgtggtgctttgaagatcaagtttgtgatgaggctgtgaaggtatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtt |
40125163 |
T |
|
| Q |
105 |
tataggatccactttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtga |
204 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
40125162 |
tattggatccactttgtatactttggcaggtgttggtgccattggtgctattggtaacttcttattccatgtctttacaggtgattttcttactgagtga |
40125063 |
T |
|
| Q |
205 |
agccaagaatatttggattcaaaagggtattcatttttcattgatccatttgctttcttcgtgttttgggatatgtatgaagatttagatgaagaatatg |
304 |
Q |
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||||||||||| | | || | ||||| |||||| ||| ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
40125062 |
agccaagaataatgagtttgacaagggcattcatgtttaattgatccatttggtttcttagtgtttttggatatgtatgaagatttagatgaagaatatg |
40124963 |
T |
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| Q |
305 |
a |
305 |
Q |
| |
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| |
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| T |
40124962 |
a |
40124962 |
T |
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