View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13146_low_6 (Length: 227)
Name: NF13146_low_6
Description: NF13146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13146_low_6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22905760 - 22905525
Alignment:
| Q |
1 |
tcatcgaataaattatcatatccgattccgatcttaatttatggttttgtgagcaagtgagctatgataatcaaggtgcaataagagaaaatacatttgt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22905760 |
tcatagaataaattatcatatccgattccgatcttaatttatggttttgtgagcaagtgagctatgataatcaaggtgcaataagagaaaatacatttgt |
22905661 |
T |
|
| Q |
101 |
aaaac-aaatttaatgcaagatcaagtttgtgtttgaatataatgttttctcaaatgattactctcaacaagagaggatataaaaataagc--------t |
191 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22905660 |
aaaacaaaatttaatgcaagatcaagtttgtgtttgaatacaatgttttctcaaatgattactctcaacaagagaggatataaaaataagctcataagtt |
22905561 |
T |
|
| Q |
192 |
cataactattccaagttaactctcacaaagaaaata |
227 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22905560 |
cataactattccatgttaactctcacaaagaaaata |
22905525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 17182924 - 17182885
Alignment:
| Q |
144 |
gttttctcaaatgattactctcaacaagagaggatataaa |
183 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
17182924 |
gttttctcaaatgataactctcaacaagaaaggatataaa |
17182885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University