View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13147_high_4 (Length: 371)
Name: NF13147_high_4
Description: NF13147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13147_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 38930908 - 38931276
Alignment:
| Q |
1 |
cattcacttcttgtggactaagcccaaaaacatgagcaagtacttccccaggtgttgcactaatcgctgaatcacgccctatcattgtactaatctcagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38930908 |
cattcacttcttgtggactaagcccaaaaacatgagcaagtacttccccaggtgttgcactaatcgctgaatcacgccctatcattgtactaatctcagc |
38931007 |
T |
|
| Q |
101 |
tctatcatttgttttgaaaactatgtattccaatccctcactctccgcctgttctgccaccgcgaaattctgcggcaccaccaacaatcttccccttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931008 |
tctatcatttgttttgaaaactatgtattccaatccctcactctccgcctgttctgccactgcgaaattctgcggcaccaccaacaatcttccccttttt |
38931107 |
T |
|
| Q |
201 |
acctctccattgaacaccgattttccctcactattcaccacttgaaccctccctcttcctcttgttacatacattatgctgtccgcattcatgttccaat |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
38931108 |
acctctccattgaacactgattttccctcactattcaccacttgaaccctccctcttcctcttgttacgtacattatgctgttcgcattcatgttccaat |
38931207 |
T |
|
| Q |
301 |
gtggcacaaatataccatcctgcacataagcgaaatatcagttaagttcaatttaaatgatatagttca |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38931208 |
gtggcacaaatataccatcctgcacataagcgaaatatcagttaagttaaatttaaatgatatagttca |
38931276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University