View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13147_high_5 (Length: 361)
Name: NF13147_high_5
Description: NF13147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13147_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 34567338 - 34567005
Alignment:
| Q |
13 |
aatattagtacaataattggaaaattaaactaatgtatatattttttgattttgcagatttgatagagatttgagatggagaactggtgtaaacatagtt |
112 |
Q |
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| T |
34567338 |
aatattagtacaataattggaaaattaaactaatgtatatattttttgattttgcagatttgatagagatttgagatggagaactggtgtaaacataatt |
34567239 |
T |
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| Q |
113 |
ccaatccattgtgatagttcaaacaattttcaaatcacacttgaagcattagaaactgcatacaaaaatgcagaatccatgaacatgaaagtaaaagcag |
212 |
Q |
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| T |
34567238 |
ccaatccattgtgatagctcaaacaattttcaaatcacacttgaagcattagaaactgcatacaaaaatgcagaatccatgaacatgaaagtaaaagcag |
34567139 |
T |
|
| Q |
213 |
tacttataaccaacccatcaaatccattaggcatatcgattcaacgttcagttctcgaggacattctgaacttcgtgactcgcaagaacatacaccttgt |
312 |
Q |
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| T |
34567138 |
tacttataaccaacccatcaaatccattaggcatatcgattcaacgttcagttctcgaggacattctgaacttcgtgactcgcaagaacatacaccttgt |
34567039 |
T |
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| Q |
313 |
ctcagacgaaatctactcgggctcagttttctct |
346 |
Q |
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| T |
34567038 |
ctcagacgaaatctactcgggctcagttttctct |
34567005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 62 - 339
Target Start/End: Complemental strand, 42789616 - 42789339
Alignment:
| Q |
62 |
ttttgcagatttgatagagatttgagatggagaactggtgtaaacatagttccaatccattgtgatagttcaaacaattttcaaatcacacttgaagcat |
161 |
Q |
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| T |
42789616 |
ttttgtaggtttgatagagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacaccaaaagctt |
42789517 |
T |
|
| Q |
162 |
tagaaactgcatacaaaaatgcagaatccatgaacatgaaagtaaaagcagtacttataaccaacccatcaaatccattaggcatatcgattcaacgttc |
261 |
Q |
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| T |
42789516 |
tagaagcagcttacaaagaagcagaatcaatgaacatgaaagtgagtggagtgctgatcacaaacccttcaaacccattaggtataacagttaaacgttc |
42789417 |
T |
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| Q |
262 |
agttctcgaggacattctgaacttcgtgactcgcaagaacatacaccttgtctcagacgaaatctactcgggctcagt |
339 |
Q |
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| T |
42789416 |
agttctagaagagattcttgactttgtgacaaaaaagaacatccaccttatctcagacgaaatctactcaggatcagt |
42789339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 62 - 339
Target Start/End: Complemental strand, 42799155 - 42798877
Alignment:
| Q |
62 |
ttttgcagatttgatagagatttgagatggagaactggtgtaaacatagttccaatccattgtgatagttcaaacaattttcaaatcaca-cttgaagca |
160 |
Q |
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| T |
42799155 |
ttttgtaggtttgatagagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacaccaaaaagct |
42799056 |
T |
|
| Q |
161 |
ttagaaactgcatacaaaaatgcagaatccatgaacatgaaagtaaaagcagtacttataaccaacccatcaaatccattaggcatatcgattcaacgtt |
260 |
Q |
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| T |
42799055 |
ttagaagcagcttacaaagaagcagaatcaatgaacatgaaagtgagtggagtgctgatcacaaacccttcaaacccattaggtataacagttaaacgtt |
42798956 |
T |
|
| Q |
261 |
cagttctcgaggacattctgaacttcgtgactcgcaagaacatacaccttgtctcagacgaaatctactcgggctcagt |
339 |
Q |
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| T |
42798955 |
cagttctagaagagattcttgactttgtgacaaaaaagaacatccaccttatctcagacgaaatctactcaggatcagt |
42798877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 1462267 - 1462339
Alignment:
| Q |
114 |
caatccattgtgatagttcaaacaattttcaaatcacacttgaagcattagaaactgcatacaaaaatgcagaa |
187 |
Q |
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||||||| ||||| || |||||||||||||||||||||||| |||||||| ||| || |||||||||||||||| |
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| T |
1462267 |
caatccagtgtgacagctcaaacaattttcaaatcacactt-aagcattaaaaattgtatacaaaaatgcagaa |
1462339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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