View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13147_high_7 (Length: 251)
Name: NF13147_high_7
Description: NF13147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13147_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 44684893 - 44685116
Alignment:
| Q |
13 |
aatatatgaagatgtgttgaaatattttactcatatcatacaaatattaatttgtgcagttctttagtattgatttatatgatcataagagtataannnn |
112 |
Q |
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| T |
44684893 |
aatatatgaagatgtgttgaaatattttactcatatcatacaaatattaatttgtgcagttctttagtattgatttatatgatcataagagtataatttt |
44684992 |
T |
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| Q |
113 |
nnnn--ctttctctgagttaatgat-gacaaatgtaataagaacctataggaatctcactatttttaagctgtaatgctcctgtacaatgcagcactcat |
209 |
Q |
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| T |
44684993 |
ttttttctttctctgagttaatgatagacaaatgtaataagaacctataggaatctcactatttttaagctgtaatgcccctgtacaatgtagcactcat |
44685092 |
T |
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| Q |
210 |
ctcagagttatcttctcagggaca |
233 |
Q |
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| T |
44685093 |
ctcagagttatcttctcagggaca |
44685116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 13172244 - 13172317
Alignment:
| Q |
21 |
aagatgtgttgaaatattttactcatatc---atacaaatattaatttgtgcagttctttagtattgatttata |
91 |
Q |
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| T |
13172244 |
aagatgtgtcgagatattttacttatatcttcatacaagtattaatttgtgcagttatttagtattgatttata |
13172317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 13172349 - 13172403
Alignment:
| Q |
119 |
ttctctgagttaatgatgacaaatgtaataagaacctataggaatctcactatttttaag |
178 |
Q |
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| T |
13172349 |
ttctttgagttaatgatgacaagtgtaataagaacct-----aatctcactatttttaag |
13172403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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