View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13147_high_9 (Length: 246)
Name: NF13147_high_9
Description: NF13147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13147_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 9002608 - 9002827
Alignment:
| Q |
13 |
aatattcaggaacaacggttaaataatattagctaaaacttcaatttttctgggaataaaatagtctcgagaaagtatttactgattagcaactaaagaa |
112 |
Q |
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| T |
9002608 |
aatattcaggaacaacggttaaataatattagctaaaacttcaatttttctgggaataaaatagtctcgagaaagtatttactgattagcaactaaagaa |
9002707 |
T |
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| Q |
113 |
gatcgaaaagctgacattatagaaactgtccattttttcctcctccatcaacacagaaggtaaaaaggaagtttctacgatgaaattagtaatgaaagat |
212 |
Q |
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| T |
9002708 |
gatcgaaaagctgacattatagaaactgtccattttttcctcctccatcaacacagaaggtaaaaaggaagtttctacgatgaaattagtaatgaaagat |
9002807 |
T |
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| Q |
213 |
tggggccacatgagtttttt |
232 |
Q |
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| T |
9002808 |
tggggccacatgagtttttt |
9002827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 16715804 - 16715839
Alignment:
| Q |
135 |
aaactgtccattttttcctcctccatcaacacagaa |
170 |
Q |
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| T |
16715804 |
aaactgtccattttttcctcctccatcaacatagaa |
16715839 |
T |
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