View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13147_low_1 (Length: 632)
Name: NF13147_low_1
Description: NF13147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13147_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 26 - 531
Target Start/End: Original strand, 10124714 - 10125217
Alignment:
| Q |
26 |
ggtggtggtggaggatgtgatggttgaggaatattcaaggttagtggcaatggttgttgtggaagtggtggaatatttgggtgggcaaacattctttgaa |
125 |
Q |
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| T |
10124714 |
ggtggtggaggaggatgtgatggttgaggaatattcaaggttaacggcaatggttgttgttgaagtggtggaatatttgggtgggcaaacattctttgaa |
10124813 |
T |
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| Q |
126 |
acggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctctaatgggttgtgatttgtgaaagaaatcagagagaaaa |
225 |
Q |
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| T |
10124814 |
acggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctctaatgggttgtgatttttgaaagaaatcagagagaaaa |
10124913 |
T |
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| Q |
226 |
cgtagaatcaaaaggtttgttacgtgaaagaatgcataaattcaagggaatgagtaagactagggtatgacattggatagatatgagcaagactggtaac |
325 |
Q |
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| T |
10124914 |
cgtagaatcaaaaggtttgttacgtgaaataatgcataaattcaagggaatgagtaagactagggtctgacattggatagatatgagcaagactggtaac |
10125013 |
T |
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| Q |
326 |
aaaaactcctaacttgttgcaaattttttaggctaccatataactaaaccatatccnnnnnnnnnnnntcatatgattaaatcaaatgcctttgaattaa |
425 |
Q |
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| T |
10125014 |
aaaaactcctaacttgttgcaaattttttaggctaccatataactaaaccatatccaaaaagtaaaaatcatatgattaaatcaaatgcctttgaattaa |
10125113 |
T |
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| Q |
426 |
aagttgtccaagatcaaataccctaaataaaatctttgtaaaatatatttccgtgaaagatattttaggctcaaatcccagaatctctcattaactaaca |
525 |
Q |
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| T |
10125114 |
aagttgtccaagatcaaataacctaaataaatcttttgtaaaatatatttccgtgaaagatattttaggctcaaatcccagaacctctc--taactaaca |
10125211 |
T |
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| Q |
526 |
acaaaa |
531 |
Q |
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| T |
10125212 |
acaaaa |
10125217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 25043246 - 25043356
Alignment:
| Q |
90 |
gtggtggaatatttgggtgggcaaacattctttgaaacggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctcta |
189 |
Q |
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|||||||||| |||||||||| ||| || ||||||| | |||| |||||||||||||||||||||| | |||||||||||||| |||||| |||||| |
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| T |
25043246 |
gtggtggaatttttgggtgggaaaatatgaattgaaacagcgttagcatcggaagaggaagactttgtatcggttgttcagagtcgttcatttttctctt |
25043345 |
T |
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| Q |
190 |
atgggttgtga |
200 |
Q |
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|||| |||||| |
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| T |
25043346 |
atggattgtga |
25043356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 25043422 - 25043466
Alignment:
| Q |
265 |
attcaagggaatgagtaagactagggtatgacattggatagatat |
309 |
Q |
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| T |
25043422 |
attcaagggaatgagtaagactgggatataacaatggatagatat |
25043466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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