View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13147_low_3 (Length: 548)
Name: NF13147_low_3
Description: NF13147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13147_low_3 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 116 - 530
Target Start/End: Complemental strand, 82750 - 82330
Alignment:
| Q |
116 |
atgtggccgttgattcaggcaggtaacgtgggccttgtacaacaaactgttagaagaaacaactgtattcctaaagataaccatcacattttagtgacta |
215 |
Q |
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| T |
82750 |
atgtggccattgattcaggcaggtaacgtgggcatc--acaacaaactgttagaagaaacaactgtattcctaaacataaccatcacattttattgacta |
82653 |
T |
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| Q |
216 |
catgggtagatatcttacaaagagatgagaaaaagggttatgaagtatgtgtga----tgtaattctccttctatctcggtaattctctagtccctccct |
311 |
Q |
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| T |
82652 |
catgggtagatatcttacaaagagatgagaaaaatggttatgaagtatgcgtgagtgatgtaattctccttctatctcactaattctctagtccctccct |
82553 |
T |
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| Q |
312 |
tatattattagtctgattcttactgcatttcttttatt----acctattattctctagcaacaaagattctagttaccaagttgtagtaatgcttctttg |
407 |
Q |
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| T |
82552 |
tatattattagtctgattcttactgcatttcttttatttattacctattattctctagcaacaaagattctagttaccaagttgttgtaatgcttctttg |
82453 |
T |
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| Q |
408 |
agtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttttcattgtcaccatatcagccctgctagagag |
507 |
Q |
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| T |
82452 |
agtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttttcattgtcaccatatcagccctgctagagag |
82353 |
T |
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| Q |
508 |
ctctctccatggtgcttgggact |
530 |
Q |
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| T |
82352 |
ctctctccatggtgcttgggact |
82330 |
T |
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Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 394 - 522
Target Start/End: Original strand, 19152794 - 19152918
Alignment:
| Q |
394 |
gtaatgcttctttgagtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttttcattgtcaccatatca |
493 |
Q |
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| T |
19152794 |
gtaatgcttctttgatagaatcaataaaatctcattagcatttccatttcaactta----gtagaatcattatactggtgttttcagtgacaccatggca |
19152889 |
T |
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| Q |
494 |
gccctgctagagagctctctccatggtgc |
522 |
Q |
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| T |
19152890 |
tccctacttgagagctcttcccatggtgc |
19152918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 33117034 - 33117114
Alignment:
| Q |
366 |
caacaaagattctagttaccaagttgtagtaatgcttctttgagtgaatcaataaaatctcatttgcatttccatttcaattga |
449 |
Q |
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| T |
33117034 |
caacaaagattgtaattaccaagttgta---atgcttatttgagtgaatgaatgaaatctcatttacatttccattccaattga |
33117114 |
T |
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