View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13148_low_1 (Length: 416)
Name: NF13148_low_1
Description: NF13148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13148_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 72 - 403
Target Start/End: Original strand, 5195569 - 5195900
Alignment:
| Q |
72 |
atagctcactaccatcatcattaatcagatttgaaattaaaatcaaaacataacacaaaagtatatccttcctttcttctctattattactaatccatca |
171 |
Q |
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| T |
5195569 |
atagctcactaccatcatcattaatcagatttgaaattaaaatcaaaacataacacaaaagcatatcattcctttcttctctattattactaatccatca |
5195668 |
T |
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| Q |
172 |
tcaccataaacatcaccaactcaaaaaacacccatcaatatgatgttgattttttggtgtggctagagatgatgaacaatggccgtgatggaggttgttg |
271 |
Q |
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| T |
5195669 |
tcaccataaacatcaccaactcaaaaaacacccatcaatatgatgttgattttttggtgtggctggagatgatgaacaatggccgtgatggaggttgttg |
5195768 |
T |
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| Q |
272 |
attatcaagatgccgattcgattgtgttgatatattgannnnnnnnnnnnngacaaacaattaactgaattttgtttattattattaaacaataatgaga |
371 |
Q |
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| T |
5195769 |
attatcaagatgacgattcaattgtgttgatatattgattgttttttttttcgcaaacaattaactgaattttgtttattattattaaaaaataatgaga |
5195868 |
T |
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| Q |
372 |
tggaaattaagataaaaatgattattccaaac |
403 |
Q |
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| T |
5195869 |
tgaaaattaagataaaaatgattattccaaac |
5195900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 5195505 - 5195544
Alignment:
| Q |
11 |
catcatcatcatttggtccaatcctcatcttcatcctcta |
50 |
Q |
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| T |
5195505 |
catcatcatcatttggtccaatcctcatcttcatcctcta |
5195544 |
T |
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