View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13148_low_2 (Length: 281)
Name: NF13148_low_2
Description: NF13148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13148_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 37147981 - 37147721
Alignment:
| Q |
1 |
ataaggagggatataaatagagggaaggtgaaaaggagtgactaaatattaattgatgcaactcttattatataccctgcttgcagcttgtatggatgat |
100 |
Q |
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| T |
37147981 |
ataaggagggatataaatagagggaaggtgaaaaggagtgactaaatattaattgatgcaactcttattatataccctgcttgcagcttgtatggatgat |
37147882 |
T |
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| Q |
101 |
agtcttctctatctcgcgcgtgttatcaaacaacaaaaaagacctgactgaaaaaccagaagcttgcagggtaagagaactatgcactatattagtgaca |
200 |
Q |
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| T |
37147881 |
agtcttctctatctcgcgtgtgttatcaaacaacaaaaaagacctgactgaaaaaccagaagcttgcaggataagagaactatgcactatattagtgacg |
37147782 |
T |
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| Q |
201 |
cttgaaacaaaaaagtggtggttcatgtggctaggctcaccaggctttgcgggctagaagtg |
262 |
Q |
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| T |
37147781 |
cttgaaaca-aaaagtggtggttcatgtagctaggctcaccaggctttgtgggctagcagtg |
37147721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 46621349 - 46621400
Alignment:
| Q |
194 |
agtgacacttgaaacaaaaaagtggtggttcatgtggctaggctcaccaggc |
245 |
Q |
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| T |
46621349 |
agtgacacttgaaacaaaaaagtggtggttcaggtggctaggctcaccaggc |
46621400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 46627070 - 46627139
Alignment:
| Q |
194 |
agtgacacttgaaacaaaaaa-gtggtggttcatgtggctaggctcaccaggctttgcgggctagaagtg |
262 |
Q |
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| T |
46627070 |
agtgatacttgaaacaaaaaaagttgtggttcaagtggctaggctcaccaggcatattgggctagaagtg |
46627139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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