View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_high_12 (Length: 396)
Name: NF13149_high_12
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 9072096 - 9071728
Alignment:
| Q |
19 |
agcatacttgtaagcagcatggattggtcaaaacttggtccaaatcttccatggcttgtagaatcaggaggatgttccattcttgattcttttgtatcct |
118 |
Q |
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| T |
9072096 |
agcatacttgtaagcagcatggattggtcaaaacttggtccaaatcttccatggcttgtagaatcaggaggatgttccattcttgattcttttgtatcct |
9071997 |
T |
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| Q |
119 |
tttcttatttactagtaagatacttgtttgtttcgacgaacgtacgaactagactggtatctaaatttagatgctgaattaaattcaagtatagtcattc |
218 |
Q |
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| T |
9071996 |
tttcttatttactagtaagatacttgtttgtttcgatgaacgtacgaactagactggtatctaaatttagatgctgaattaaattcaaatatagtcattc |
9071897 |
T |
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| Q |
219 |
attacaatatgaaattgttattgagtcatagtagaagggtgctggaagaaacatgtctaccttaacttcagttttagattttgatgcagtttctatatta |
318 |
Q |
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| T |
9071896 |
atgacaatatgagattgttattgagtcatagtagaagggtgctggaagaaacatgtctaccttaacttcagttttagattttgatgcagtttctatatta |
9071797 |
T |
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| Q |
319 |
tcgatatcggacatcgaaatccctggagggcaagttcaaacatcaagttgttgcttagatgatgatgat |
387 |
Q |
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| T |
9071796 |
tcgatatcggacatcgaagtccttggagggcaagttcaaacatcaagttgttgcttaggtgatgatgat |
9071728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 34337721 - 34337619
Alignment:
| Q |
19 |
agcatacttgtaagcagcatggattggtcaaaacttggtccaaatcttccatggcttgtagaatcaggaggatgttccattcttgattcttttgtatcct |
118 |
Q |
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||||||||||| ||||| |||||||||||| | | || |||||||| |||||||| ||||| | ||||||||| | | ||||||| ||| ||||||| |
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| T |
34337721 |
agcatacttgtgcgcagcttggattggtcaacaatcggaccaaatctaccatggctggtagatgctggaggatgtgtcctccttgattttttcgtatcct |
34337622 |
T |
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| Q |
119 |
ttt |
121 |
Q |
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||| |
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| T |
34337621 |
ttt |
34337619 |
T |
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