View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_high_16 (Length: 323)
Name: NF13149_high_16
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 46655857 - 46655574
Alignment:
| Q |
18 |
gaaaacaatgtttgtcaagcagatttacataataattcnnnnnnnnnttataactacagttatatgttgaataatagataatcaattgtcagatctccct |
117 |
Q |
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| T |
46655857 |
gaaaacaatgtttgtcaaggaaatttacataataattcaaaaata--ttataactacagttatatgttaaataatagataatcaattgtcagatctccct |
46655760 |
T |
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| Q |
118 |
ctctgaatgccaaggccagtctnnnnnnnncaatggttctttcgtagtgagatttgatcatgtgatggataatggaat-aaatagtactactataaaaga |
216 |
Q |
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| T |
46655759 |
ctctgaatgccaaggccagtctaaaaaaaacaatggttctttcgtagtgagatttgatcatgtgatggataatggaataaaatagtactactataaaaga |
46655660 |
T |
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| Q |
217 |
gatgtggaagaaagggatggtgataaagtaaatctagtttgatcttcaaaaacatcattaattggttatcatttatcaatctccgacaggacctatgat |
315 |
Q |
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| T |
46655659 |
gatgtggaagaaagggatggtg-------------agtttgatcttcaaaaacatcattaattggtcatcatttatcaatctccgacaggacctatgat |
46655574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 47103556 - 47103685
Alignment:
| Q |
188 |
aatggaataaata--gtactactataaaagagatgtggaagaaagggatggtgataaagtaaatctagtttgatcttcaaaaacatcattaattggttat |
285 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| || |
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| T |
47103556 |
aatggaataaatatagtactactataaaagtgatgtggaagaaagggatggtgaaatagtaaatctagtttgatcttcaaaaacatcattaattggtcat |
47103655 |
T |
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| Q |
286 |
catttatcaatctccgacaggacctatgat |
315 |
Q |
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| T |
47103656 |
catttatcaatctccgacaggacctatgat |
47103685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 47103367 - 47103486
Alignment:
| Q |
18 |
gaaaacaatgtttgtcaagcagatttacataataattcnnnnnnnnnttataactacagttatatgttgaataatagataatcaattgtcagatctccct |
117 |
Q |
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||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47103367 |
gaaaacaatgtttgtcaaggaaatttacataataattcaaaaata--ttataactacagttatatgttgaataatagataatcaattgtcagatacccct |
47103464 |
T |
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| Q |
118 |
ctctgaatgccaaggccagtct |
139 |
Q |
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|||||| ||||||||||||||| |
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| T |
47103465 |
ctctgagtgccaaggccagtct |
47103486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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