View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_high_21 (Length: 237)
Name: NF13149_high_21
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_high_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43173382 - 43173618
Alignment:
| Q |
1 |
ttcaattgattgggaaaaaatcgacacttcactcaccatggaccaaagagcacctccattcaactttttaatggcaccaccctccactgtcatgagaaca |
100 |
Q |
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| T |
43173382 |
ttcaattgattgggaaaaaatcgactcttcactcaccatggaccaaagagcacctccattcaactttttaatggcaccaccctccactgtcatgagaaca |
43173481 |
T |
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| Q |
101 |
acagcaattccagcaaatgccagtgacaacatggaattttccttccttcccaagtataatgcctccacatattatgtgtacatgtactttgctgaaatcc |
200 |
Q |
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| T |
43173482 |
acagcaattccagcaaatgccagtgacaacatggaatattccttccttcccaagtataatgcctccacatattatgtgtacatgtactttgctgaaatcc |
43173581 |
T |
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| Q |
201 |
agaagctccaagcaaatcaaattagagagttcaacat |
237 |
Q |
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| T |
43173582 |
agaagatccaggcaaatcaaattagagagttcaacat |
43173618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 43163710 - 43163939
Alignment:
| Q |
2 |
tcaattgattgggaaaaaatcgacacttcactcaccatggaccaaagagcacctccattcaactttttaatggcaccaccctccactgtcatgagaacaa |
101 |
Q |
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| T |
43163710 |
tcaattgattggaaaaaaatagacacttcactcaccatagaccaa---gcaccttcattcagctttacgccggtaccaccctccaatgtgatgcgaacaa |
43163806 |
T |
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| Q |
102 |
cagcaattccagcaaatgccagtgacaacatggaattttccttccttcccaagtataatgcctccacatattatgtgtacatgtactttgctgaaatcca |
201 |
Q |
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| T |
43163807 |
cagcaattccagcaaatgccagtgacaacatggaattttccttccttcccaagtataattcctccagatattatgtgtacatgtactttgctgaaatcca |
43163906 |
T |
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| Q |
202 |
gaagctccaagcaaatcaaattagagagttcaa |
234 |
Q |
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| T |
43163907 |
gaagctccaggaaaatcaaatcagagagttcaa |
43163939 |
T |
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