View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_high_22 (Length: 221)
Name: NF13149_high_22
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 15073093 - 15073297
Alignment:
| Q |
1 |
cacgagattgatactaacacacaaaagtgattgaatgtataattagaagtatctggtgtctgaggtgtcttgtcagacaccagatacaaaatggctttaa |
100 |
Q |
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| T |
15073093 |
cacgagattgatactaacacacaaaagtgattgaatgtataattagaagtatctggtgtctgaggtgtcttgtcagacaccagatacaatatggctttaa |
15073192 |
T |
|
| Q |
101 |
tctaaagtgttggtgctacatagatcacaaatgacacatacacccagagactatattgacacaattttttaacttaagaaaatgaaagtgattgaatgta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15073193 |
tctaaagtgttggtgctacatagatcacaaatgacacatacacccagagactacattgacacaattttttaacttaagaaaatgaaagtgattgaatgta |
15073292 |
T |
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| Q |
201 |
gtcac |
205 |
Q |
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||||| |
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| T |
15073293 |
gtcac |
15073297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 18725252 - 18725224
Alignment:
| Q |
97 |
ttaatctaaagtgttggtgctacatagat |
125 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
18725252 |
ttaatctaaagtgttggtgctacatagat |
18725224 |
T |
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