View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_high_25 (Length: 205)
Name: NF13149_high_25
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 2480113 - 2480197
Alignment:
| Q |
102 |
gatgagaaggcaaattttaggaggaacaaaggcaagaccattgtgaaagaaggtataacttcattggaaagcatagtcaaacata |
186 |
Q |
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| T |
2480113 |
gatgagaagacaaattttaggaggaacaaaggcaagaccattgtgaaagaaggtataacttcattggaaagcatagtcaaacata |
2480197 |
T |
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 2480034 - 2480085
Alignment:
| Q |
49 |
attgttatgcaaaatcctgaaaaatttcggggctctcataccaaaaatgtgg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2480034 |
attgttatgcaaaatcctgaaaaatttcagggctctcataccaaaaatgtgg |
2480085 |
T |
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