View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_high_26 (Length: 201)
Name: NF13149_high_26
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 36864806 - 36864634
Alignment:
| Q |
15 |
cagagaggctgttgtggtgaaccaagatatgcacaaggcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36864806 |
cagagaggctgttgtggtgaaccaagatatgcacaaggcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaag |
36864707 |
T |
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| Q |
115 |
gtcctctagtttactgcagttaccaagagatgaaggaatagtccctgaaaacatattaccatatagataatac |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36864706 |
gtcctctagtttactgcagttaccaagagatgaaggaatagtccctgaaaacatattaccatatagataatac |
36864634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 37836042 - 37835874
Alignment:
| Q |
15 |
cagagaggctgttgtggtgaaccaagatatgcacaaggcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaag |
114 |
Q |
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||||||||||||||| |||||||||||| | |||||| |||||||||||||||| |||| || ||||||| ||||||| |||||||||||||||||||| |
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| T |
37836042 |
cagagaggctgttgttgtgaaccaagatgttcacaagacttgaaattctccaaacactgaccggaattttgcctctcagtcggttgaaagacaattcaag |
37835943 |
T |
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| Q |
115 |
gtcctctagtttactgcagttaccaagagatgaaggaatagtccctgaaaacatattaccatatagata |
183 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
37835942 |
gtcctctaatttactgcaattaccaagagatgaaggaatagtccctgacaactgattaccatatagata |
37835874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 37849415 - 37849249
Alignment:
| Q |
17 |
gagaggctgttgtggtgaaccaagatatgcacaaggcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaaggt |
116 |
Q |
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||||||||||||| ||||||||| || |||||||| |||||||||||||||| |||| || |||||| |||||||||||||||||||| |||||||||| |
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| T |
37849415 |
gagaggctgttgttgtgaaccaatatgtgcacaagacttgaaattctccaaacactgaccggaatttcgcctctcaaacggttgaaagaaaattcaaggt |
37849316 |
T |
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| Q |
117 |
cctctagtttactgcagttaccaagagatgaaggaatagtccctgaaaacatattaccatatagata |
183 |
Q |
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|||||| ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||||||||||||| |
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| T |
37849315 |
cctctaatttgctgcaattaccaagagatgtaggaatagtccctgacaactgattaccatatagata |
37849249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 37830328 - 37830170
Alignment:
| Q |
25 |
gttgtggtgaaccaagatatgcacaaggcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaaggtcctctagt |
124 |
Q |
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||||| |||||||||||| |||||||| ||| |||||||||||||||| || |||||| ||||||||||||||||||||||| |||||||| || ||| |
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| T |
37830328 |
gttgttgtgaaccaagatgtgcacaagactttgaattctccaaatactgaccggaatttcacctctcaaacggttgaaagacaaatcaaggtcttcaagt |
37830229 |
T |
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| Q |
125 |
ttactgcagttaccaagagatgaaggaatagtccctgaaaacatattaccatatagata |
183 |
Q |
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|||||||| || ||||||||||||||||| ||||||||||||||||||| || |||||| |
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| T |
37830228 |
ttactgcaattgccaagagatgaaggaatggtccctgaaaacatattactatgtagata |
37830170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 37841661 - 37841493
Alignment:
| Q |
15 |
cagagaggctgttgtggtgaaccaagatatgcacaaggcttgaaattctccaaatactggcctgaatttttcctctcaaacggttgaaagacaattcaag |
114 |
Q |
| |
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||||||||||||||| |||||||||||| |||| ||| ||| |||||||||| | | || |||||| |||||||||||||||||||| || | ||| |
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| T |
37841661 |
cagagaggctgttgttgtgaaccaagatgtgcaaaagactttgtattctccaaacaaagaccggaatttcacctctcaaacggttgaaagataagttaag |
37841562 |
T |
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| Q |
115 |
gtcctctagtttactgcagttaccaagagatgaaggaatagtccctgaaaacatattaccatatagata |
183 |
Q |
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||||||||||||||| || ||||||| || ||||||||||||||||||||||||||||| || |||||| |
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| T |
37841561 |
gtcctctagtttactacaattaccaatagctgaaggaatagtccctgaaaacatattacgatgtagata |
37841493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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