View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_high_3 (Length: 668)
Name: NF13149_high_3
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 19 - 658
Target Start/End: Complemental strand, 9072096 - 9071458
Alignment:
| Q |
19 |
agcatacttgtaagcagcatggattggtcaaaacttggtccaaatcttccatggcttgtagaatcaggaggatgttccattcttgattcttttgtatcct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072096 |
agcatacttgtaagcagcatggattggtcaaaacttggtccaaatcttccatggcttgtagaatcaggaggatgttccattcttgattcttttgtatcct |
9071997 |
T |
|
| Q |
119 |
tttcttatttactagtaagatacttgtttgtttcgacgaacgtacgaactagactggtatctaaatttagatgctgaattaaattcaagtatagtcattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9071996 |
tttcttatttactagtaagatacttgtttgtttcgatgaacgtacgaactagactggtatctaaatttagatgctgaattaaattcaaatatagtcattc |
9071897 |
T |
|
| Q |
219 |
attacaatatgaaattgttattgagtcatagtagaagggtgctggaagaaacatgtctaccttaacttcagttttagattttgatgcagtttctatatta |
318 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071896 |
atgacaatatgagattgttattgagtcatagtagaagggtgctggaagaaacatgtctaccttaacttcagttttagattttgatgcagtttctatatta |
9071797 |
T |
|
| Q |
319 |
tcgatatcggacatcgaaatccctggagggcaagttcaaacatcaagttgttgcttagatgatgatgatttgaagaaaaaaggattctcaggtttctctc |
418 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071796 |
tcgatatcggacatcgaagtccttggagggcaagttcaaacatcaagttgttgcttaggtgatgatgatttgaagaaaaaaggattctcaggtttctctc |
9071697 |
T |
|
| Q |
419 |
tcttgataagacaccgttcattacttgaatgcagattttctaattgcagataatccaaatcaattttcatgcatttcatgctattcttcaactttagtgt |
518 |
Q |
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| T |
9071696 |
tcttgataagacaccgttcattacttgaatgcagattttctaattgcagataatccaaatcaattttcatgcatttcatgctattcttcaactttagtgt |
9071597 |
T |
|
| Q |
519 |
cactcattctgatttctgtcataagattttggttatcatatgattttttggtgcatttcacatgtcaaaatatgcaatcacacagattaattaattgttg |
618 |
Q |
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|||||||||| |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
9071596 |
cactcattcttatttctgt-ataagattttggttatcatttagctttttggtgcatttcacatgtcaaaatgtgcaatcacacagattacctaattgttg |
9071498 |
T |
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| Q |
619 |
ataaatgtgtattacagccatgcagtctccaccatgatga |
658 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
9071497 |
ataaatgtgtattacagccatgcagtctcaaccatgatga |
9071458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 490 - 559
Target Start/End: Complemental strand, 9068844 - 9068775
Alignment:
| Q |
490 |
catttcatgctattcttcaactttagtgtcactcattctgatttctgtcataagattttggttatcatat |
559 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||| |
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| T |
9068844 |
catttcatgatattcttcaactttagtttcactcattctgatttctgtaataagattttcgttatcatat |
9068775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 34337721 - 34337619
Alignment:
| Q |
19 |
agcatacttgtaagcagcatggattggtcaaaacttggtccaaatcttccatggcttgtagaatcaggaggatgttccattcttgattcttttgtatcct |
118 |
Q |
| |
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||||||||||| ||||| |||||||||||| | | || |||||||| |||||||| ||||| | ||||||||| | | ||||||| ||| ||||||| |
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| T |
34337721 |
agcatacttgtgcgcagcttggattggtcaacaatcggaccaaatctaccatggctggtagatgctggaggatgtgtcctccttgattttttcgtatcct |
34337622 |
T |
|
| Q |
119 |
ttt |
121 |
Q |
| |
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||| |
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|
| T |
34337621 |
ttt |
34337619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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