View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13149_high_4 (Length: 654)
Name: NF13149_high_4
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 608; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Original strand, 40451379 - 40452022
Alignment:
| Q |
1 |
tttcgatattttatatcatttatggaaagttgaaggtgctgaactttgtgggtaagtagagaagatagtaaagaagtgagtttgcgtgcaacaagagtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
40451379 |
tttcgatattttatatcatttatgaaaagttgaaggtgctgaactttgtgggtaagtagagaagatagtaaagaagtaagtttgcgtgcatcaagagtaa |
40451478 |
T |
|
| Q |
101 |
ctgatagtcgagaaaaatgattgtgtgcatcaaaaataactcgaggtgttattttaatggcgaggctttgtatttctacattagatttgtgaagtagtgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40451479 |
ctgatagtcgagaaaaatgattgtgtgcatcccaaataactcgaggtgttatttcaatggcgaggctttgtatttctacattagatttgtgaagtagtgt |
40451578 |
T |
|
| Q |
201 |
ggtgactaaacctaaaagagaatttggtgttgctgagttttgattttgagaatgagaaggactaataatatgaaaatcatagacggataattgggtccac |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40451579 |
ggtgactaaacctaaaagagaatttgctgttgctgagttttgattttgagaatgagaaggactaataatatgaaaatcatagacggataattgggtccac |
40451678 |
T |
|
| Q |
301 |
aagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatatggtgaagaatgttatcgggtaagtcactaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40451679 |
aagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatatggtgaagaatgttatcgggtaagtcactaa |
40451778 |
T |
|
| Q |
401 |
tatttttctccattttgagtgatgatgattcattgatgagatttttcatcttttcgtgtaatgattcattgatgagatatgcttgattgcccaagaaaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40451779 |
tatttttctccattttgagtgatgatgattcattgatgagatttttcatcttttcgtgtaatgattcattgatgagatatgcttgattgcccaagaaaag |
40451878 |
T |
|
| Q |
501 |
gtatggaagatggtggacatctttggacaccatgttgctgctcatctttctaggtctcatgttcaaatctggtgataacaattcaaatgttggacgaatc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40451879 |
gtatggaagatggtggacatctttggacaccatgttgctgctcatctttctaggtctcatgttcaaatctggtgataacaattcaaatgttggacgagtc |
40451978 |
T |
|
| Q |
601 |
cattcaggcattgccctggcttcaattaggtcctgttgatgatg |
644 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40451979 |
cattcaggcattaccctggcttcaattaggtcctgttgatgatg |
40452022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 542
Target Start/End: Complemental strand, 40275904 - 40275820
Alignment:
| Q |
461 |
atgattcattgatgagatatgcttgattgcccaagaaaaggtatgg---aagatggtggacatctttggacaccatgttgctgct |
542 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||| | ||||||||| |||||| |||||||| |||||||||| | ||||||| |
|
|
| T |
40275904 |
atgattcattgatgagatatgctttactccccaaaacaaggtatggaagaagatgatggacatcattggacaccaagctgctgct |
40275820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 31219136 - 31219190
Alignment:
| Q |
272 |
gaaaatcatagacggataattgggtccacaagtacctccactttgttgctaatat |
326 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31219136 |
gaaaatcaaagacgggtaattgggtccacaagtatctccactttgttgctaatat |
31219190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 14729362 - 14729462
Alignment:
| Q |
271 |
tgaaaatcatagacggataattgggtccacaagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatat |
370 |
Q |
| |
|
||||||||| ||| |||||| || ||||||||||| |||||||||| ||||||||||| ||| | |||||||| || || | ||| || |||||||||| |
|
|
| T |
14729362 |
tgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatat |
14729461 |
T |
|
| Q |
371 |
g |
371 |
Q |
| |
|
| |
|
|
| T |
14729462 |
g |
14729462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 14740901 - 14741001
Alignment:
| Q |
281 |
agacggataattgggtccacaagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatatggtgaagaat |
380 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||| || |||||| || ||| | || || || ||||| ||||| || |||||||||| |||||||| |
|
|
| T |
14740901 |
agacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaat |
14741000 |
T |
|
| Q |
381 |
g |
381 |
Q |
| |
|
| |
|
|
| T |
14741001 |
g |
14741001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 17594125 - 17594025
Alignment:
| Q |
271 |
tgaaaatcatagacggataattgggtccacaagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatat |
370 |
Q |
| |
|
||||||||| ||| |||||| || ||||||||||| |||||||||| ||||||||||| ||| | |||||||| || || | ||| || |||||||||| |
|
|
| T |
17594125 |
tgaaaatcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatat |
17594026 |
T |
|
| Q |
371 |
g |
371 |
Q |
| |
|
| |
|
|
| T |
17594025 |
g |
17594025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University